BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0114500 Os10g0114500|AY569037
(341 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14685.3 | chr1:5043086-5043925 FORWARD LENGTH=280 192 3e-49
AT2G01930.1 | chr2:427358-428209 REVERSE LENGTH=284 189 2e-48
AT1G68120.1 | chr1:25526296-25527108 REVERSE LENGTH=271 186 1e-47
AT2G35550.1 | chr2:14929526-14930618 FORWARD LENGTH=272 159 2e-39
AT5G42520.1 | chr5:17001287-17002466 FORWARD LENGTH=343 142 3e-34
AT2G21240.1 | chr2:9101515-9102489 REVERSE LENGTH=297 142 3e-34
AT4G38910.2 | chr4:18145478-18146429 REVERSE LENGTH=284 141 5e-34
>AT1G14685.3 | chr1:5043086-5043925 FORWARD LENGTH=280
Length = 279
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 98/110 (89%)
Query: 232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRR 291
K++ +VING+ +D+S +P PIC+CTGAPQQCYRWG GGWQSACCTT IS +PLPMSTKRR
Sbjct: 170 KSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRR 229
Query: 292 GARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
GARI+GRKMS GAFKKVLEKLA +G+N NPIDLK+ WA+HGTNKFVTIR
Sbjct: 230 GARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279
>AT2G01930.1 | chr2:427358-428209 REVERSE LENGTH=284
Length = 283
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 96/110 (87%)
Query: 232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRR 291
K++ +VING+ +D+S +P P+C+CTG PQQCYRWG GGWQSACCTT IS YPLPMSTKRR
Sbjct: 174 KSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRR 233
Query: 292 GARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
GARI+GRKMS GAFKKVLEKL+ EGY+ N IDLK+ WA+HGTNKFVTIR
Sbjct: 234 GARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVTIR 283
>AT1G68120.1 | chr1:25526296-25527108 REVERSE LENGTH=271
Length = 270
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 96/110 (87%)
Query: 232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRR 291
K I MVING+ +D+ +P P+CSCTG PQQCYRWG GGWQSACCTT +S YPLP++TKRR
Sbjct: 161 KCIEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRR 220
Query: 292 GARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
GARIAGRKMS GAF+KVLEKL+ +G++ +NPIDLK+ WAKHGTNKFVTIR
Sbjct: 221 GARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 270
>AT2G35550.1 | chr2:14929526-14930618 FORWARD LENGTH=272
Length = 271
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 89/110 (80%)
Query: 232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRR 291
KN+ + I+ D S +P P+CSCTG + CY+WG GGWQS+CCT +ISTYPLPMST R
Sbjct: 162 KNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRP 221
Query: 292 GARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
GAR+AGRKMS+GA+ K+L +LA EGY+L++P+DLK WA+HGTNKFVTI+
Sbjct: 222 GARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 271
>AT5G42520.1 | chr5:17001287-17002466 FORWARD LENGTH=343
Length = 342
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 238 INGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAG 297
+N + D + +P P+CSCTG +QCY+WG GGWQS+CCTTT+S YPLP +R AR+ G
Sbjct: 238 LNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGG 297
Query: 298 RKMSHGAFKKVLEKLAGEG-YNLNNPIDLKTFWAKHGTNKFVTIR 341
RKMS AF K+L +LA EG ++L+NP+DLK WAKHGTN+++TI+
Sbjct: 298 RKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342
>AT2G21240.1 | chr2:9101515-9102489 REVERSE LENGTH=297
Length = 296
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 81/104 (77%)
Query: 238 INGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAG 297
+N + D + +P P+CSCTG+ +QCY+WG GGWQS+CCTTT+S YPLP +R +R+ G
Sbjct: 193 LNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGG 252
Query: 298 RKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
RKMS F ++L +L+ EGY+L+ P+DLK +WA+HGTN+++TI+
Sbjct: 253 RKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296
>AT4G38910.2 | chr4:18145478-18146429 REVERSE LENGTH=284
Length = 283
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 78/101 (77%)
Query: 241 IDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAGRKM 300
+ D +P P+C+CTG +QCY+WG GGWQS+CCTTT+S YPLP +R +R+ GRKM
Sbjct: 183 VTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKM 242
Query: 301 SHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
S F ++L +LAGEG+ L++P+DLK +WA+HGTN+++TI+
Sbjct: 243 SGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,111,686
Number of extensions: 156946
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)