Os09g0568200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor CBF/NF-Y/archaeal histone domain containing protein.
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Os09g0568200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor CBF/NF-Y/archaeal histone domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.44 | 0.343 | 3.07 | 0.207 | 0.0501 | 1.9 | 0.146 | 8.06 | 0.0457 | 11.8 | 9.6 | 627 | -- | -- |
| 58.42 | 0.356 | 3.06 | 0.256 | 0.0143 | 1.17 | -0.158 | -- | 0.0535 | 0.219 | 10.17 | 391 | -- | -- |
| 52.56 | 0.338 | 3.06 | 0.221 | 0.0482 | 2 | -- | 9.19 | 0.0434 | 12.1 | 10.3 | 606 | -- | -- |
| 56.36 | 0.35 | 3.03 | 0.136 | 0.00738 | 0.357 | -- | -- | 0.0574 | 14.5 | 10.11 | 462 | -- | -- |
| 52.46 | 0.337 | 3.07 | 0.273 | -- | 2.72 | -- | 12.4 | 0.0538 | -- | 10.38 | 611 | -- | -- |
| 56.57 | 0.353 | 3.04 | 0.106 | 0.0237 | -- | 0.161 | -- | 0.0477 | 11.9 | -- | -- | -- | -- |
| 56.68 | 0.353 | 3.04 | 0.113 | 0.0231 | -- | -- | -- | 0.0484 | 12 | -- | -- | -- | -- |
| 56.3 | 0.349 | 3.03 | 0.143 | -- | 0.393 | -- | -- | 0.0595 | -- | 10.06 | 373 | -- | -- |
| 56.7 | 0.351 | 3.04 | -- | 0.0213 | 0.321 | -- | -- | 0.044 | 10.5 | 9.999 | 377 | -- | -- |
| 56.72 | 0.352 | 3.04 | 0.112 | -- | -- | -- | -- | 0.0481 | -- | -- | -- | -- | -- |
| 57.02 | 0.353 | 3.04 | -- | 0.0217 | -- | -- | -- | 0.0359 | 11.7 | -- | -- | -- | -- |
| 56.74 | 0.351 | 3.04 | -- | -- | 0.318 | -- | -- | 0.0417 | -- | 10 | 373 | -- | -- |
| 57.05 | 0.353 | 3.04 | -- | -- | -- | -- | -- | 0.0357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.62 | wind | 1.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 51.70 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 3 | 51.71 | wind | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 5 | 51.71 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 8 | 51.71 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 14 | 51.71 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 27 | 51.72 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 17 | 7 |
| 30 | 51.73 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 33 | 51.74 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 23 | 2 |
| 36 | 51.74 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 19 | 5 |
| 56 | 51.76 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 23 | 1 |
| 107 | 51.80 | wind | 9.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 280 | 52.11 | wind | 9.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 282 | 52.12 | wind | 7.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 347 | 52.22 | wind | 9.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 386 | 52.26 | wind | 9.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 514 | 52.43 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 551 | 52.49 | atmosphere | 1000.0 | 10 | < th | dose independent | sin | 11 | NA |
| 553 | 52.50 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 11 | NA |
| 585 | 52.55 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 643 | 52.64 | wind | 9.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 661 | 52.68 | wind | 9.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 664 | 52.68 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 736 | 52.81 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 744 | 52.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 771 | 52.90 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 773 | 52.90 | atmosphere | 1000.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 804 | 52.97 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 827 | 53.01 | wind | 7.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 853 | 53.08 | wind | 9.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 903 | 53.19 | wind | 7.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 917 | 53.22 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 3 |
| 924 | 53.25 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 938 | 53.29 | wind | 7.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 944 | 53.31 | wind | 9.0 | 720 | > th | dose independent | rect. | 14 | 4 |
| 952 | 53.35 | wind | 9.0 | 720 | > th | dose independent | sin | 13 | NA |
| 972 | 53.42 | wind | 9.0 | 720 | < th | dose independent | sin | 13 | NA |
| 982 | 53.44 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 18 | 1 |