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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0562400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.021) R2 : 0.000332
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0172 (0.0441) R2dN8 : 0.000429 R2N8 : 0.000332
σ : 0.395
deviance : 71.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.53 0.38 3.18 0.935 0.215 0.537 -0.387 -4.16 0.0952 8.18 29.7 1512 -- --
67.99 0.387 3.29 0.0363 0.224 0.0664 -0.396 -- -0.0147 8.46 29.2 3536 -- --
65.61 0.377 3.19 0.93 0.202 0.588 -- -4.51 0.121 8.04 29.61 1740 -- --
67.52 0.383 3.24 0.546 0.269 0.823 -- -- 0.197 7.96 18.33 6776 -- --
67.5 0.383 3.19 0.968 -- 0.608 -- -4.51 0.154 -- 29.5 1753 -- --
68.22 0.387 3.29 0.0205 0.227 -- -0.392 -- -0.019 8.04 -- -- -- --
68.68 0.388 3.29 0.00919 0.228 -- -- -- -0.0189 7.9 -- -- -- --
69.01 0.387 3.25 0.418 -- 0.589 -- -- 0.103 -- 18.7 7888 -- --
67.5 0.383 3.27 -- 0.254 0.267 -- -- -0.000366 7.92 18.01 6541 -- --
71.51 0.395 3.3 0.0117 -- -- -- -- -0.0159 -- -- -- -- --
68.68 0.388 3.29 -- 0.228 -- -- -- -0.02 7.9 -- -- -- --
70.09 0.39 3.29 -- -- 0.25 -- -- 0.0229 -- 18.71 6635 -- --
71.52 0.395 3.3 -- -- -- -- -- -0.0172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.25 temperature 25.0 720 > th dose dependent rect. 5 3
6 63.88 temperature 25.0 720 > th dose dependent rect. 24 9
15 64.17 temperature 25.0 720 > th dose independent rect. 5 3
19 64.26 temperature 15.0 10 > th dose dependent rect. 23 21
28 64.56 temperature 10.0 30 > th dose dependent rect. 21 23
39 64.72 temperature 25.0 90 > th dose independent rect. 5 14
42 64.74 temperature 20.0 720 > th dose dependent rect. 8 1
47 64.77 temperature 10.0 720 > th dose dependent rect. 21 12
52 64.80 temperature 15.0 90 > th dose dependent rect. 5 14
57 64.84 temperature 15.0 10 > th dose dependent rect. 5 15
78 64.95 humidity 90.0 14400 > th dose dependent rect. 5 1
96 65.04 temperature 25.0 90 > th dose independent rect. 23 20
97 65.04 temperature 10.0 720 > th dose dependent rect. 3 6
119 65.13 humidity 90.0 14400 > th dose dependent rect. 15 13
125 65.14 wind 1.0 43200 < th dose dependent rect. 6 1
126 65.14 wind 3.0 43200 < th dose dependent rect. 9 1
138 65.16 precipitation 0.1 14400 < th dose independent rect. 9 2
141 65.16 precipitation 0.1 14400 < th dose dependent rect. 9 2
146 65.17 humidity 80.0 14400 > th dose independent rect. 12 1
156 65.18 humidity 90.0 14400 > th dose dependent rect. 17 10
164 65.18 temperature 30.0 90 < th dose dependent rect. 1 22
171 65.20 wind 5.0 14400 < th dose independent rect. 11 1
177 65.21 atmosphere 1000.0 10 > th dose independent rect. 21 23
178 65.21 humidity 80.0 14400 > th dose dependent rect. 12 1
186 65.21 humidity 90.0 14400 > th dose dependent rect. 7 22
187 65.22 humidity 90.0 14400 > th dose dependent sin 15 NA
189 65.22 temperature 10.0 270 > th dose dependent rect. 5 12
201 65.24 radiation 1.0 14400 > th dose independent rect. 6 1
202 65.24 radiation 1.0 14400 < th dose independent rect. 6 1
208 65.25 humidity 80.0 14400 < th dose independent rect. 12 1
221 65.26 radiation 1.0 14400 < th dose dependent rect. 6 1
228 65.27 radiation 1.0 43200 > th dose independent rect. 18 11
231 65.27 radiation 1.0 720 < th dose dependent rect. 24 14
232 65.27 temperature 10.0 720 > th dose dependent rect. 18 15
237 65.28 temperature 25.0 720 > th dose independent rect. 8 1
239 65.28 wind 5.0 14400 < th dose independent rect. 9 7
242 65.28 temperature 15.0 90 > th dose dependent rect. 8 11
268 65.30 temperature 10.0 720 > th dose dependent rect. 21 9
273 65.30 humidity 90.0 14400 > th dose dependent rect. 16 19
279 65.31 radiation 1.0 14400 > th dose independent rect. 18 14
280 65.31 temperature 20.0 720 > th dose dependent sin 8 NA
302 65.32 wind 3.0 43200 > th dose independent rect. 19 2
303 65.32 temperature 30.0 270 < th dose dependent sin 5 NA
321 65.33 wind 5.0 14400 > th dose independent rect. 9 7
322 65.33 humidity 80.0 14400 > th dose independent rect. 8 7
329 65.33 temperature 30.0 270 < th dose dependent rect. 24 13
348 65.33 humidity 90.0 14400 > th dose dependent rect. 24 22
349 65.34 wind 3.0 43200 < th dose independent rect. 20 1
354 65.34 temperature 10.0 14400 > th dose dependent rect. 8 1
356 65.34 temperature 30.0 14400 < th dose dependent rect. 8 1
383 65.35 wind 5.0 14400 > th dose independent rect. 11 1
389 65.35 atmosphere 1000.0 10 > th dose independent rect. 23 21
391 65.35 humidity 90.0 14400 > th dose dependent no NA NA
392 65.35 humidity 90.0 14400 > th dose dependent rect. 21 1
415 65.36 wind 7.0 14400 < th dose independent rect. 22 1
442 65.37 temperature 10.0 43200 > th dose independent rect. 10 1
443 65.37 humidity 90.0 14400 > th dose independent rect. 21 1
479 65.38 radiation 1.0 14400 < th dose independent rect. 21 11
499 65.39 precipitation 0.1 14400 > th dose independent rect. 9 2
517 65.39 humidity 90.0 14400 > th dose independent rect. 17 12
522 65.39 wind 5.0 43200 < th dose dependent rect. 19 1
527 65.39 precipitation 0.1 14400 > th dose dependent rect. 9 2
561 65.40 humidity 80.0 14400 < th dose independent rect. 8 7
625 65.41 temperature 20.0 14400 > th dose dependent rect. 13 1
643 65.41 humidity 90.0 14400 > th dose dependent rect. 2 10
701 65.42 humidity 90.0 14400 > th dose dependent rect. 1 14
705 65.42 temperature 25.0 720 < th dose dependent rect. 20 16
706 65.42 humidity 90.0 14400 > th dose dependent rect. 24 16
712 65.43 radiation 1.0 14400 > th dose independent sin 8 NA
713 65.43 radiation 1.0 14400 < th dose independent sin 8 NA
744 65.43 temperature 10.0 270 > th dose dependent sin 5 NA
768 65.43 humidity 70.0 43200 < th dose dependent rect. 24 12
800 65.44 temperature 25.0 90 > th dose independent rect. 5 6
823 65.44 radiation 30.0 4320 < th dose independent rect. 16 16
829 65.44 humidity 90.0 14400 > th dose dependent sin 5 NA
831 65.44 wind 7.0 14400 < th dose dependent rect. 11 1
832 65.44 temperature 25.0 4320 > th dose dependent rect. 6 1
870 65.45 humidity 90.0 10 < th dose independent rect. 3 2
874 65.45 humidity 90.0 14400 > th dose independent rect. 1 10
900 65.45 radiation 1.0 720 < th dose dependent rect. 1 8
928 65.46 radiation 1.0 43200 < th dose independent rect. 18 11
929 65.46 humidity 70.0 43200 < th dose independent rect. 22 12
932 65.46 temperature 20.0 270 > th dose independent rect. 21 20
933 65.46 temperature 25.0 720 < th dose dependent sin 8 NA
938 65.46 temperature 30.0 14400 < th dose dependent rect. 13 1
981 65.47 temperature 25.0 43200 > th dose independent rect. 14 1
982 65.47 temperature 25.0 43200 < th dose independent rect. 14 1
992 65.47 humidity 90.0 14400 > th dose independent rect. 2 8