Os09g0560400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0560400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.92 | 0.329 | 9.15 | -0.178 | 0.906 | -0.435 | -0.619 | -1.01 | -0.106 | 5.74 | 0.08101 | 4525 | -- | -- |
| 49.52 | 0.328 | 9.14 | -0.182 | 0.901 | -0.59 | -0.591 | -- | -0.114 | 5.71 | 0.3215 | 4851 | -- | -- |
| 49.85 | 0.329 | 9.15 | -0.176 | 0.904 | -0.442 | -- | -1.07 | -0.105 | 5.71 | 0.02998 | 4527 | -- | -- |
| 50.51 | 0.331 | 9.14 | -0.185 | 0.898 | -0.595 | -- | -- | -0.113 | 5.7 | 0.33 | 4915 | -- | -- |
| 91.99 | 0.447 | 9.16 | -0.149 | -- | -0.477 | -- | -0.775 | -0.0849 | -- | 0.1637 | 4763 | -- | -- |
| 57.17 | 0.354 | 9.12 | -0.358 | 0.901 | -- | -0.708 | -- | -0.0518 | 5.76 | -- | -- | -- | -- |
| 58.4 | 0.358 | 9.12 | -0.362 | 0.897 | -- | -- | -- | -0.049 | 5.73 | -- | -- | -- | -- |
| 90.42 | 0.443 | 9.15 | -0.111 | -- | -0.615 | -- | -- | -0.0774 | -- | 0.5 | 20239 | -- | -- |
| 49.36 | 0.327 | 9.13 | -- | 0.964 | -0.638 | -- | -- | -0.0706 | 5.73 | 0.5 | 19639 | -- | -- |
| 100.17 | 0.468 | 9.13 | -0.334 | -- | -- | -- | -- | -0.0277 | -- | -- | -- | -- | -- |
| 61.86 | 0.368 | 9.11 | -- | 0.892 | -- | -- | -- | -0.00861 | 5.75 | -- | -- | -- | -- |
| 89.61 | 0.441 | 9.15 | -- | -- | -0.65 | -- | -- | -0.0939 | -- | 0.9219 | 21975 | -- | -- |
| 103.12 | 0.474 | 9.12 | -- | -- | -- | -- | -- | 0.00937 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.93 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 2 | 48.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 3 | 48.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 5 | 48.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 7 | 48.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 12 | 48.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 18 | 48.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 20 |
| 31 | 48.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 34 | 48.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 8 |
| 35 | 48.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 11 |
| 37 | 48.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 48 | 48.37 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 55 | 48.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 57 | 48.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 60 | 48.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 109 | 48.45 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 114 | 48.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 126 | 48.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 18 |
| 135 | 48.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 162 | 48.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 163 | 48.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 169 | 48.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 215 | 48.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 252 | 48.56 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 253 | 48.56 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 260 | 48.56 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 282 | 48.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 283 | 48.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 309 | 48.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 310 | 48.60 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 377 | 48.65 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 378 | 48.65 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 406 | 48.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 482 | 48.79 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 483 | 48.79 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 492 | 48.80 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 501 | 48.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 502 | 48.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 507 | 48.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 508 | 48.83 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 510 | 48.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 513 | 48.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 518 | 48.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 636 | 48.96 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 714 | 49.02 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 905 | 49.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 922 | 49.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 934 | 49.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 938 | 49.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 972 | 49.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 973 | 49.27 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 977 | 49.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 17 |
| 991 | 49.29 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 994 | 49.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 17 |