BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0560400 Os09g0560400|Os09g0560400
         (213 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69980.1  | chr1:26356559-26357647 REVERSE LENGTH=206          122   1e-28

>AT1G69980.1 | chr1:26356559-26357647 REVERSE LENGTH=206
          Length = 205

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 92/180 (51%), Gaps = 47/180 (26%)

Query: 46  SGGRRSLLGFVEA--QGNSSYRCSPSGPCVPCQYSEKLMNNPCSWIATTEEVCTLRNDRI 103
           S GRR LLGF E     N ++ CSPSGPCV C  SEK                       
Sbjct: 41  SVGRRFLLGFKETPKGSNITFACSPSGPCVSCNSSEK----------------------- 77

Query: 104 LIKSDEKYCCSETGYRLPLKCVEV---------------QNVTKEGNN--TKQRKVLDDA 146
                EKY CSETGYR+P KC EV               QN     N+   K R +LDD+
Sbjct: 78  ---RKEKYRCSETGYRIPFKCKEVREEVDAHKKNGEEETQNDQSNNNDEEAKTRNLLDDS 134

Query: 147 S--TSGGSKHYTTYRSCVPLEDEEKLSVLGFEVMMAGMLLISGPFVYYRKRRTAIMQGAS 204
           S  T   S+ Y TYRSCVP  DEEKLSVLGFE +M G+ L+SG  +Y RKR+T  M G S
Sbjct: 135 SPATKVKSQSYKTYRSCVPSADEEKLSVLGFESIMLGLFLLSGAAIYIRKRQTVPMLGVS 194



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,533,314
Number of extensions: 178649
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)