Os09g0559600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os09g0559600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.25 | 0.439 | 11.2 | 0.455 | 2.02 | -0.73 | 0.0225 | 1.18 | -0.465 | 8 | 1.67 | 1463 | -- | -- |
| 89.1 | 0.44 | 11.2 | 0.529 | 2.01 | -0.834 | 0.0337 | -- | -0.489 | 7.95 | 1.62 | 1476 | -- | -- |
| 87.23 | 0.435 | 11.2 | 0.451 | 2.02 | -0.719 | -- | 1.17 | -0.465 | 7.99 | 1.672 | 1468 | -- | -- |
| 88.39 | 0.438 | 11.2 | 0.515 | 2.01 | -0.872 | -- | -- | -0.454 | 7.99 | 0.8284 | 1459 | -- | -- |
| 247.23 | 0.736 | 11.2 | 0.749 | -- | -0.855 | -- | 0.405 | -0.327 | -- | 1.84 | 1533 | -- | -- |
| 97.03 | 0.462 | 11.1 | 0.734 | 2.06 | -- | -0.109 | -- | -0.317 | 8.08 | -- | -- | -- | -- |
| 97.07 | 0.461 | 11.1 | 0.731 | 2.06 | -- | -- | -- | -0.317 | 8.08 | -- | -- | -- | -- |
| 247.54 | 0.736 | 11.2 | 0.723 | -- | -0.856 | -- | -- | -0.302 | -- | 0.8284 | 1459 | -- | -- |
| 95.63 | 0.455 | 11.2 | -- | 2.01 | -1.09 | -- | -- | -0.464 | 7.97 | 0.73 | 1463 | -- | -- |
| 329.97 | 0.849 | 11.2 | 0.75 | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
| 111.17 | 0.493 | 11.1 | -- | 2.07 | -- | -- | -- | -0.398 | 8.05 | -- | -- | -- | -- |
| 261.33 | 0.755 | 11.2 | -- | -- | -0.861 | -- | -- | -0.382 | -- | 0.8284 | 1459 | -- | -- |
| 344.81 | 0.867 | 11.2 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 9 | 81.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 10 | 81.99 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 13 | 82.56 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 15 | 82.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 23 | 83.19 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 25 | 83.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 28 | 83.32 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 45 | 83.65 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 56 | 83.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 99 | 84.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 153 | 84.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 170 | 85.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 190 | 85.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 202 | 85.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 207 | 85.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 209 | 85.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 227 | 85.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 230 | 85.69 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 257 | 85.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 287 | 85.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 289 | 85.97 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 296 | 85.99 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 308 | 86.04 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 328 | 86.15 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 330 | 86.16 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 348 | 86.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 351 | 86.21 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 353 | 86.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 366 | 86.23 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 384 | 86.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 412 | 86.36 | wind | 1.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 444 | 86.41 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 446 | 86.41 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 448 | 86.41 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 503 | 86.41 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 505 | 86.41 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 507 | 86.41 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 561 | 86.42 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 3 |
| 562 | 86.42 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 563 | 86.43 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 606 | 86.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 628 | 86.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 630 | 86.58 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 638 | 86.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 653 | 86.63 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 684 | 86.74 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 696 | 86.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 701 | 86.81 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 704 | 86.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 705 | 86.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 730 | 86.90 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 731 | 86.90 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 762 | 86.97 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 776 | 86.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 782 | 87.00 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 790 | 87.04 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 795 | 87.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 814 | 87.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 835 | 87.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 840 | 87.11 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 916 | 87.21 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 972 | 87.35 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 984 | 87.38 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 16 |