BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0559600 Os09g0559600|AK109214
(102 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134 59 4e-10
AT1G19730.1 | chr1:6823163-6824020 REVERSE LENGTH=120 59 7e-10
AT1G59730.1 | chr1:21952759-21953392 REVERSE LENGTH=130 56 5e-09
AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119 55 1e-08
AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115 52 6e-08
AT1G69880.1 | chr1:26321540-26322794 FORWARD LENGTH=149 51 1e-07
AT5G42980.1 | chr5:17242772-17243718 FORWARD LENGTH=119 48 8e-07
>AT5G39950.1 | chr5:15990885-15991881 REVERSE LENGTH=134
Length = 133
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P +++ PA+ MA K + + + VD + + V A+PTFVLV
Sbjct: 50 LVVDFSASWCGPCRMIEPAIHAMAD--KFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLV 107
Query: 65 KRHRAVARVVGVNRDDLHSSINK 87
KR + + R++G +D+L ++K
Sbjct: 108 KRGKEIERIIGAKKDELEKKVSK 130
>AT1G19730.1 | chr1:6823163-6824020 REVERSE LENGTH=120
Length = 119
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P +++ P +A S A + VD ++ + VEA+PTFV +
Sbjct: 31 IVIDFTASWCPPCRMIAPIFNDLAKKFMSS-AIFFKVDVDELQSVAKEFGVEAMPTFVFI 89
Query: 65 KRHRAVARVVGVNRDDLHSSINKH 88
K V ++VG N++DL + I KH
Sbjct: 90 KAGEVVDKLVGANKEDLQAKIVKH 113
>AT1G59730.1 | chr1:21952759-21953392 REVERSE LENGTH=130
Length = 129
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P K M P V ++AS K EA + VDR + R LP FV V
Sbjct: 46 LVIDFTAVWCGPCKAMEPRVREIAS--KYSEAVFARVDVDRLMDVAGTYRAITLPAFVFV 103
Query: 65 KRHRAVARVVGVNRDDLHSSINKH 88
KR + RVVG D+L I +H
Sbjct: 104 KRGEEIDRVVGAKPDELVKKIEQH 127
>AT1G45145.1 | chr1:17075264-17076256 REVERSE LENGTH=119
Length = 118
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P + + P +MA K I VD + + +VEA+PTFV +
Sbjct: 30 IVIDFTASWCPPCRFIAPVFAEMAK--KFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFM 87
Query: 65 KRHRAVARVVGVNRDDLHSSINKH 88
K + RVVG +D+++ + KH
Sbjct: 88 KEGNIIDRVVGAAKDEINEKLMKH 111
>AT3G51030.1 | chr3:18951123-18951955 REVERSE LENGTH=115
Length = 114
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
VV+ F A W P + + P +A L + + D ++ ++A+PTF+ +
Sbjct: 31 VVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTDELKSVASDWAIQAMPTFMFL 88
Query: 65 KRHRAVARVVGVNRDDLHSSINKHLA 90
K + + +VVG +D+L S+I KHLA
Sbjct: 89 KEGKILDKVVGAKKDELQSTIAKHLA 114
>AT1G69880.1 | chr1:26321540-26322794 FORWARD LENGTH=149
Length = 148
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P K + P +E++A+ K + E I VD ++ + LP V +
Sbjct: 62 LVIEFTAKWCGPCKTLEPKLEELAA--KYTDVEFVKIDVDVLMSVWMEFNLSTLPAIVFM 119
Query: 65 KRHRAVARVVGVNRDDLHSSINKH 88
KR R V VVGV D+L +NK+
Sbjct: 120 KRGREVDMVVGVKVDELERKLNKY 143
>AT5G42980.1 | chr5:17242772-17243718 FORWARD LENGTH=119
Length = 118
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 5 VVLVFMAPWSEPWKLMRPAVEKMASGLKSEEAEVCTISVDRFNTLGRLLRVEALPTFVLV 64
+V+ F A W P + + P +A K + + VD NT+ +V+A+PTF+ +
Sbjct: 30 IVIDFTATWCPPCRFIAPVFADLAK--KHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFM 87
Query: 65 KRHRAVARVVGVNRDDLHSSINKH 88
K VVG ++++ +++ KH
Sbjct: 88 KEGEIKETVVGAAKEEIIANLEKH 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,725,072
Number of extensions: 52494
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)