Os09g0553800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0553800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.43 | 0.33 | 10.1 | -1.58 | 3.33 | 0.324 | 0.37 | -1.99 | -0.342 | 6.36 | 80.72 | 1233 | -- | -- |
| 53.55 | 0.341 | 10.1 | -1.42 | 3.35 | 0.226 | 0.347 | -- | -0.306 | 6.39 | 80.38 | 1113 | -- | -- |
| 49.76 | 0.329 | 10.1 | -1.57 | 3.35 | 0.308 | -- | -1.83 | -0.341 | 6.38 | 80.03 | 1156 | -- | -- |
| 53.84 | 0.342 | 10.1 | -1.41 | 3.35 | 0.222 | -- | -- | -0.308 | 6.38 | 80.44 | 1124 | -- | -- |
| 570.39 | 1.12 | 10.2 | -1.3 | -- | -0.745 | -- | 0.156 | -0.226 | -- | 80 | 1310 | -- | -- |
| 54.34 | 0.346 | 10.1 | -1.41 | 3.34 | -- | 0.319 | -- | -0.293 | 6.32 | -- | -- | -- | -- |
| 54.59 | 0.346 | 10.1 | -1.41 | 3.34 | -- | -- | -- | -0.294 | 6.32 | -- | -- | -- | -- |
| 570.55 | 1.12 | 10.2 | -1.3 | -- | -0.745 | -- | -- | -0.227 | -- | 80 | 1310 | -- | -- |
| 106.09 | 0.48 | 10.1 | -- | 3.3 | 0.216 | -- | -- | -0.143 | 6.37 | 81.82 | 1222 | -- | -- |
| 633.95 | 1.18 | 10.2 | -1.32 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 106.85 | 0.484 | 10.1 | -- | 3.32 | -- | -- | -- | -0.137 | 6.34 | -- | -- | -- | -- |
| 615.06 | 1.16 | 10.2 | -- | -- | -0.753 | -- | -- | -0.0826 | -- | 80 | 1310 | -- | -- |
| 679.87 | 1.22 | 10.2 | -- | -- | -- | -- | -- | -0.0757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.71 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 13 |
| 3 | 49.03 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 49.08 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 17 |
| 12 | 49.36 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 13 | 49.40 | humidity | 90.0 | 10 | < th | dose independent | sin | 10 | NA |
| 17 | 49.41 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 11 |
| 22 | 49.47 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 25 | 49.53 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 27 | 49.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 15 |
| 33 | 49.57 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 38 | 49.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 55 | 49.67 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 61 | 49.70 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 86 | 49.79 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 107 | 49.85 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 178 | 49.97 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 188 | 49.99 | humidity | 80.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 189 | 49.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 243 | 50.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 244 | 50.05 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 245 | 50.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 250 | 50.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 282 | 50.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 291 | 50.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 293 | 50.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 294 | 50.10 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 306 | 50.11 | humidity | 80.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 307 | 50.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 330 | 50.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 331 | 50.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 333 | 50.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 336 | 50.12 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 338 | 50.13 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 348 | 50.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 354 | 50.14 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 391 | 50.15 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 393 | 50.15 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 406 | 50.17 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 410 | 50.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 416 | 50.18 | humidity | 90.0 | 30 | < th | dose independent | rect. | 17 | 7 |
| 421 | 50.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 432 | 50.18 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 13 |
| 451 | 50.19 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 17 |
| 475 | 50.21 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 479 | 50.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 485 | 50.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 541 | 50.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 543 | 50.25 | humidity | 90.0 | 90 | < th | dose independent | rect. | 17 | 9 |
| 568 | 50.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 574 | 50.27 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 589 | 50.27 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 639 | 50.30 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 666 | 50.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 673 | 50.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 691 | 50.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 698 | 50.32 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 752 | 50.35 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 768 | 50.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 769 | 50.36 | radiation | 10.0 | 720 | < th | dose independent | rect. | 23 | 11 |
| 792 | 50.37 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 818 | 50.37 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 903 | 50.40 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 19 | 21 |