BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0553800 Os09g0553800|AK068354
         (73 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44360.1  | chr2:18320855-18321584 REVERSE LENGTH=136           88   9e-19

>AT2G44360.1 | chr2:18320855-18321584 REVERSE LENGTH=136
          Length = 135

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 52/59 (88%)

Query: 1   LEIAAELDKLSARLDNVDKMISSAMASDPEVKSLLSTTADIWMPVITASADERRGFAGT 59
           +EIA ELDKLSA+LD+VD+MISSA+ASDP+V++LLS TAD+WMPVITA A+ER  F  +
Sbjct: 57  VEIAKELDKLSAKLDDVDEMISSAIASDPQVQTLLSGTADVWMPVITAGAEERLNFTAS 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.125    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 950,512
Number of extensions: 20976
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 73
Length of database: 11,106,569
Length adjustment: 45
Effective length of query: 28
Effective length of database: 9,872,849
Effective search space: 276439772
Effective search space used: 276439772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)