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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0552500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupin 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0167) R2 : 0.0012
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.026 (0.0351) R2dN8 : 0.00155 R2N8 : 0.0012
σ : 0.314
deviance : 45.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.37 0.306 3.06 -0.000936 0.00691 -0.276 -0.159 1.39 0.019 2.67 1.076 16 -- --
43.91 0.311 3.04 0.0578 0.025 -0.149 -0.315 -- 0.0341 3.34 1.076 16 -- --
42.44 0.303 3.06 -0.000374 0.0177 -0.269 -- 1.44 0.015 4.53 1.1 16 -- --
44.19 0.312 3.04 0.0648 0.0397 -0.139 -- -- 0.0356 6.21 1.1 16 -- --
42.45 0.303 3.06 0.00137 -- -0.28 -- 1.45 0.0196 -- 1.096 16 -- --
44.59 0.313 3.04 0.0766 0.0757 -- -0.284 -- 0.0317 4.1 -- -- -- --
44.79 0.313 3.04 0.08 0.0789 -- -- -- 0.0332 5.17 -- -- -- --
44.26 0.311 3.04 0.0642 -- -0.154 -- -- 0.0366 -- 1.001 16 -- --
44.3 0.312 3.04 -- 0.0391 -0.145 -- -- 0.0285 6.21 1.1 16 -- --
45.12 0.314 3.04 0.0828 -- -- -- -- 0.0352 -- -- -- -- --
44.96 0.314 3.04 -- 0.0803 -- -- -- 0.0243 5.13 -- -- -- --
44.37 0.311 3.04 -- -- -0.16 -- -- 0.0296 -- 1.001 16 -- --
45.3 0.314 3.05 -- -- -- -- -- 0.026 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.43 temperature 20.0 30 > th dose dependent rect. 2 1
2 35.47 temperature 20.0 30 > th dose independent rect. 2 1
3 35.47 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 35.56 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 35.61 wind 3.0 30 < th dose dependent rect. 2 1
12 35.62 wind 3.0 30 < th dose independent rect. 2 1
18 35.68 temperature 10.0 30 > th dose independent rect. 2 1
20 35.68 temperature 25.0 30 < th dose independent rect. 2 1
22 35.68 humidity 50.0 30 > th dose independent rect. 2 1
27 35.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 35.68 radiation 1.0 30 < th dose independent rect. 2 1
34 35.68 precipitation 0.1 30 < th dose independent rect. 2 1
35 35.68 temperature 10.0 30 > th dose independent rect. 3 23
36 35.68 humidity 50.0 30 > th dose dependent rect. 2 1
38 35.68 radiation 1.0 30 < th dose dependent rect. 2 1
43 35.68 precipitation 0.1 30 < th dose dependent rect. 2 1
49 35.92 radiation 1.0 43200 < th dose dependent rect. 3 1
50 35.95 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 36.10 temperature 30.0 30 < th dose dependent rect. 2 1
55 36.26 wind 1.0 30 > th dose independent rect. 2 1
67 36.39 wind 9.0 1440 < th dose independent rect. 3 1
68 36.39 temperature 10.0 1440 > th dose independent rect. 3 1
71 36.39 temperature 30.0 1440 < th dose independent rect. 3 1
75 36.39 humidity 50.0 1440 > th dose independent rect. 3 1
84 36.39 atmosphere 995.0 1440 > th dose independent rect. 3 1
85 36.39 radiation 1.0 1440 < th dose independent rect. 3 1
105 36.39 temperature 10.0 1440 > th dose independent rect. 4 23
161 37.02 atmosphere 1000.0 30 > th dose independent rect. 3 23
171 37.39 precipitation 0.1 30 < th dose independent rect. 3 23
172 37.39 precipitation 0.1 30 < th dose dependent rect. 3 23
173 37.49 wind 9.0 30 < th dose independent rect. 3 23
201 39.27 humidity 50.0 30 > th dose independent rect. 3 23
245 40.25 humidity 90.0 90 < th dose independent rect. 2 1
269 40.77 temperature 30.0 30 < th dose independent rect. 3 23
302 41.29 atmosphere 1015.0 30 < th dose independent rect. 3 23
348 41.51 humidity 90.0 90 < th dose independent rect. 1 3
374 41.68 wind 1.0 10 < th dose independent rect. 21 6
378 41.68 wind 1.0 10 < th dose independent rect. 14 13
426 41.83 temperature 10.0 30 > th dose dependent rect. 3 23
448 41.95 wind 1.0 10 > th dose independent rect. 23 23
482 42.03 wind 1.0 30 > th dose independent rect. 3 23
490 42.04 atmosphere 995.0 720 > th dose independent rect. 23 16
513 42.09 radiation 10.0 30 < th dose independent rect. 3 23
522 42.12 temperature 10.0 720 > th dose independent rect. 15 8
523 42.12 temperature 10.0 720 > th dose independent rect. 23 16
525 42.15 humidity 50.0 720 > th dose independent rect. 3 8
531 42.19 temperature 10.0 720 > th dose independent rect. 3 8
532 42.19 atmosphere 995.0 720 > th dose independent rect. 3 8
533 42.19 temperature 10.0 720 > th dose independent rect. 11 16
544 42.22 atmosphere 1000.0 10 > th dose independent rect. 16 10
548 42.24 humidity 90.0 10 > th dose independent rect. 24 3
553 42.25 atmosphere 995.0 720 > th dose independent rect. 15 8
556 42.26 radiation 10.0 10 < th dose independent rect. 14 12
558 42.27 radiation 10.0 10 < th dose independent rect. 16 10
562 42.27 radiation 40.0 10 < th dose dependent rect. 14 12
567 42.29 wind 9.0 720 < th dose independent rect. 3 8
570 42.30 temperature 25.0 270 > th dose independent rect. 19 8
571 42.30 precipitation 0.1 720 < th dose independent rect. 15 8
572 42.30 atmosphere 995.0 720 > th dose independent rect. 11 16
578 42.30 precipitation 0.1 720 < th dose dependent rect. 15 8
603 42.38 wind 1.0 10 > th dose independent sin 15 NA
608 42.39 wind 9.0 10 < th dose independent rect. 16 10
636 42.44 temperature 10.0 10 > th dose independent rect. 16 10
637 42.44 radiation 30.0 10 < th dose independent rect. 16 10
639 42.44 temperature 10.0 10 > th dose independent rect. 2 14
641 42.44 atmosphere 1015.0 10 < th dose independent rect. 2 14
647 42.45 atmosphere 995.0 10 > th dose independent rect. 2 14
648 42.45 precipitation 0.1 10 < th dose independent rect. 2 14
652 42.45 precipitation 0.1 10 < th dose dependent rect. 2 14
653 42.46 humidity 50.0 10 > th dose independent rect. 16 10
668 42.48 radiation 10.0 10 < th dose dependent rect. 4 22
713 42.50 precipitation 0.1 10 < th dose independent rect. 16 10
720 42.50 precipitation 0.1 10 < th dose dependent rect. 16 10
735 42.53 wind 3.0 30 < th dose dependent rect. 2 6
741 42.54 temperature 30.0 30 < th dose independent rect. 2 14
750 42.55 wind 9.0 10 < th dose independent rect. 2 14
755 42.55 precipitation 0.1 720 < th dose independent rect. 11 16
757 42.55 precipitation 0.1 720 < th dose dependent rect. 11 16
766 42.57 radiation 30.0 10 < th dose independent rect. 14 12
770 42.58 temperature 30.0 10 < th dose independent rect. 16 10
771 42.58 atmosphere 1000.0 10 > th dose independent rect. 14 12
777 42.59 temperature 10.0 1440 > th dose independent rect. 17 10
780 42.59 radiation 30.0 1440 < th dose independent rect. 17 10
786 42.59 temperature 10.0 1440 > th dose independent rect. 3 14
817 42.63 precipitation 0.1 720 < th dose independent rect. 3 8
819 42.63 radiation 10.0 10 < th dose independent rect. 12 14
822 42.63 wind 1.0 10 > th dose independent rect. 21 23
824 42.63 wind 3.0 30 < th dose dependent rect. 22 5
825 42.63 precipitation 0.1 720 < th dose dependent rect. 3 8
952 42.69 atmosphere 1015.0 720 < th dose independent rect. 3 8
963 42.70 wind 9.0 30 < th dose dependent rect. 3 23
974 42.72 humidity 50.0 30 > th dose independent rect. 2 14
986 42.74 precipitation 0.1 720 < th dose independent rect. 23 16
989 42.74 precipitation 0.1 720 < th dose dependent rect. 23 16
999 42.76 wind 1.0 10 > th dose independent rect. 23 11