BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0552500 Os09g0552500|AK108790
         (350 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07750.1  | chr1:2404300-2405863 REVERSE LENGTH=357            182   2e-46
AT2G28680.1  | chr2:12303118-12304747 REVERSE LENGTH=357          174   9e-44

>AT1G07750.1 | chr1:2404300-2405863 REVERSE LENGTH=357
          Length = 356

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 168/347 (48%), Gaps = 9/347 (2%)

Query: 5   PKAGKPLVENDAGSYLAWSGKNQPALAGEKLGCGLLVLKPLGFALPHYADSGKFGYVLGG 64
           PK  K +   D GSY AW  +  P L    +G   L L+  GFA+P Y+DS K  YVL G
Sbjct: 7   PKLPKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKVAYVLQG 66

Query: 65  SAVVG-VLPVGLDARERVVRLEAGDVIAMRAGEVTWWYNDADGEDVTIVFMGDTARAASP 123
           S   G VLP   +  E+V+ ++ GD IA+  G VTWW+N+ D E + I+F+G+T +    
Sbjct: 67  SGTAGIVLP---EKEEKVIAIKQGDSIALPFGVVTWWFNNEDPE-LVILFLGETHKGHKA 122

Query: 124 GDISYFVLAGPMXXXXXXXXXXXXXXXXXTSPEQAATAFRSQPAVLLTRLSRKLQDVRPR 183
           G  + F L G                              SQ    + +L    +  +P+
Sbjct: 123 GQFTEFYLTG-TNGIFTGFSTEFVGRAWDLDENTVKKLVGSQTGNGIVKLDAGFKMPQPK 181

Query: 184 EHDRHGIVVNAARMPADSSTXXXXXXTKIVTAAHLPVLGQLGFSVGLTPLDAGAAVRGPW 243
           E +R G V+N    P D           ++   +LP++G++GF   L  +DA +    P 
Sbjct: 182 EENRAGFVLNCLEAPLDVDIKDGGRVV-VLNTKNLPLVGEVGFGADLVRIDAHSMCS-PG 239

Query: 244 VLRDAAAQAVYVARGSGRVQVAGAGGASTLLDAEAAAGSLLVVPRYAVALVGVDAGGMEL 303
              D+A Q  Y+  GSGRVQV G  G   +L+    AGSL +VPR+ V     DA GM  
Sbjct: 240 FSCDSALQVTYIVGGSGRVQVVGGDGKR-VLETHIKAGSLFIVPRFFVVSKIADADGMSW 298

Query: 304 VSLIKSPRPAMKQFTGKGSVIGGLTPEIVQAALNVSPELVEQLRMTK 350
            S++ +P P      G  SV   L+PE++QAA  V+PE+ +  R T+
Sbjct: 299 FSIVTTPDPIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRSTR 345



>AT2G28680.1 | chr2:12303118-12304747 REVERSE LENGTH=357
          Length = 356

 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 172/349 (49%), Gaps = 13/349 (3%)

Query: 5   PKAGKPLVENDAGSYLAWSGKNQPALAGEKLGCGLLVLKPLGFALPHYADSGKFGYVLGG 64
           P+  K +   D GSY AW  +  P L    +G   L L+  G ALP Y+DS K  YVL G
Sbjct: 7   PRLPKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKVAYVLQG 66

Query: 65  SAVVG-VLPVGLDARERVVRLEAGDVIAMRAGEVTWWYNDADGEDVTIVFMGDTARAASP 123
           +   G VLP   +  E+V+ ++ GD IA+  G VTWW+N+ D E + ++F+G+T +    
Sbjct: 67  AGTAGIVLP---EKEEKVIAIKKGDSIALPFGVVTWWFNNEDTE-LVVLFLGETHKGHKA 122

Query: 124 GDISYFVLAGP--MXXXXXXXXXXXXXXXXXTSPEQAATAFRSQPAVLLTRLSRKLQDVR 181
           G  + F L G   +                 T+ ++      SQ    + ++   L+   
Sbjct: 123 GQFTDFYLTGSNGIFTGFSTEFVGRAWDLDETTVKKLVG---SQTGNGIVKVDASLKMPE 179

Query: 182 PREHDRHGIVVNAARMPADSSTXXXXXXTKIVTAAHLPVLGQLGFSVGLTPLDAGAAVRG 241
           P++ DR G V+N    P D           ++   +LP++G++GF   L  +D G ++  
Sbjct: 180 PKKGDRKGFVLNCLEAPLDVDIKDGGRVV-VLNTKNLPLVGEVGFGADLVRID-GHSMCS 237

Query: 242 PWVLRDAAAQAVYVARGSGRVQVAGAGGASTLLDAEAAAGSLLVVPRYAVALVGVDAGGM 301
           P    D+A Q  Y+  GSGRVQ+ GA G   +L+    AG L +VPR+ V     D+ G+
Sbjct: 238 PGFSCDSALQVTYIVGGSGRVQIVGADGKR-VLETHVKAGVLFIVPRFFVVSKIADSDGL 296

Query: 302 ELVSLIKSPRPAMKQFTGKGSVIGGLTPEIVQAALNVSPELVEQLRMTK 350
              S++ +P P      G+ SV   L+PE++QAA  V PE+ +  R  +
Sbjct: 297 SWFSIVTTPDPIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSKR 345



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,803,070
Number of extensions: 269908
Number of successful extensions: 597
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)