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Os09g0552400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupin, RmlC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.21 (0.0438) R2 : 0.541
β1 : -3.17 (0.165) R2dD : 0.409 R2D : 0.238
β2 : 0.619 (0.106) R2dC : 0.0355 R2C : 0.00633
β3 : 2.09 (0.127) R2dE : 0.298 R2E : 0.0999
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0941 (0.0934) R2dN8 : 0.00137 R2N8 : -0.00687
σ : 0.817
deviance : 307.89
__
_____
C
peak time of C : 10.7
E
wheather : temperature
threshold : 26.52
memory length : 1263
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.11 0.808 6.42 -4.83 0.656 2.84 0.345 -6.82 -0.456 10.8 26.4 1253 -- --
306.86 0.816 6.23 -3.18 0.62 2.09 0.73 -- -0.134 11.2 26.29 1257 -- --
296.55 0.802 6.42 -4.82 0.655 2.83 -- -6.9 -0.453 10.6 26.42 1253 -- --
307.89 0.817 6.21 -3.17 0.619 2.09 -- -- -0.0941 10.7 26.52 1263 -- --
318.56 0.831 6.44 -4.81 -- 2.63 -- -6.47 -0.456 -- 26.43 1338 -- --
488.18 1.04 6.2 -2.5 0.427 -- -0.372 -- -0.0342 8.2 -- -- -- --
488.5 1.04 6.2 -2.51 0.426 -- -- -- -0.033 8.58 -- -- -- --
328.29 0.844 6.23 -3.16 -- 1.94 -- -- -0.106 -- 26.5 1346 -- --
549.7 1.09 6.1 -- 0.578 1.48 -- -- 0.44 10.6 28.5 1229 -- --
498.68 1.04 6.22 -2.51 -- -- -- -- -0.0291 -- -- -- -- --
654.95 1.2 6.14 -- 0.42 -- -- -- 0.247 9.03 -- -- -- --
566.43 1.11 6.09 -- -- 1.39 -- -- 0.539 -- 31.69 1229 -- --
665.08 1.2 6.15 -- -- -- -- -- 0.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.19 wind 3 43200 > th dose dependent rect. 2 14
2 298.46 wind 1 43200 > th dose dependent rect. 3 12
9 299.56 wind 9 43200 < th dose dependent rect. 3 12
15 300.36 wind 3 43200 > th dose dependent sin 3 NA
17 300.41 wind 3 43200 > th dose dependent rect. 6 1
20 300.81 wind 3 43200 < th dose independent rect. 2 2
29 301.44 wind 3 43200 > th dose independent rect. 3 11
40 301.97 radiation 30 14400 > th dose independent rect. 16 16
41 302.00 humidity 70 14400 < th dose independent rect. 18 14
53 302.64 wind 9 43200 < th dose dependent sin 4 NA
54 302.68 radiation 20 1440 < th dose dependent rect. 18 10
73 303.63 humidity 80 43200 < th dose independent rect. 22 2
78 303.89 wind 3 43200 > th dose independent rect. 2 8
79 303.93 humidity 70 14400 < th dose dependent rect. 17 4
80 303.93 humidity 70 14400 < th dose dependent rect. 17 14
96 304.04 wind 3 43200 > th dose independent rect. 3 4
106 304.30 wind 3 43200 < th dose independent rect. 2 10
109 304.32 wind 3 43200 < th dose independent rect. 2 8
110 304.40 humidity 70 14400 < th dose independent rect. 18 4
146 305.24 temperature 25 1440 > th dose dependent rect. 16 1
171 306.00 wind 1 43200 > th dose dependent rect. 9 1
184 306.56 wind 9 43200 < th dose dependent rect. 9 1
187 306.62 humidity 90 14400 < th dose independent rect. 17 9
196 306.79 humidity 80 43200 < th dose dependent rect. 22 1
201 306.88 humidity 70 14400 < th dose dependent rect. 18 1
203 306.97 radiation 20 1440 < th dose dependent rect. 18 7
209 307.21 humidity 80 43200 > th dose independent rect. 23 2
221 307.44 wind 1 43200 > th dose dependent rect. 9 4
222 307.45 wind 9 43200 < th dose dependent rect. 9 4
244 307.84 temperature 25 1440 > th dose dependent rect. 11 12
249 307.94 temperature 25 1440 > th dose dependent rect. 11 21
275 308.35 temperature 25 1440 > th dose dependent sin 18 NA
304 308.76 temperature 25 1440 > th dose dependent rect. 13 10
306 308.78 radiation 30 14400 > th dose independent rect. 7 1
321 308.78 temperature 25 1440 > th dose dependent rect. 13 19
331 308.90 wind 5 43200 < th dose independent rect. 2 15
389 309.31 wind 3 43200 > th dose independent sin 5 NA
415 309.54 temperature 25 1440 > th dose dependent rect. 5 19
453 309.78 temperature 25 1440 > th dose dependent rect. 13 23
513 310.19 wind 5 43200 < th dose independent sin 2 NA
519 310.24 temperature 25 1440 > th dose dependent no NA NA
521 310.25 temperature 25 1440 > th dose dependent rect. 20 23
548 310.40 humidity 80 14400 > th dose independent rect. 17 1
555 310.44 humidity 80 43200 > th dose independent rect. 23 5
566 310.51 wind 5 43200 > th dose independent rect. 2 15
569 310.55 radiation 1 4320 < th dose independent rect. 18 11
695 311.39 radiation 1 4320 < th dose independent rect. 18 7
743 311.82 wind 5 43200 > th dose independent sin 2 NA
795 312.36 wind 3 43200 < th dose independent sin 6 NA
820 312.59 radiation 1 4320 < th dose independent rect. 18 5
830 312.71 humidity 70 14400 > th dose independent rect. 19 13
849 312.91 wind 7 43200 > th dose dependent rect. 19 20
850 312.93 radiation 1 4320 < th dose independent rect. 18 2
897 313.24 humidity 90 14400 > th dose independent rect. 18 9
900 313.28 wind 9 43200 < th dose independent rect. 19 19
913 313.39 radiation 1 4320 > th dose independent rect. 18 11
930 313.56 humidity 80 43200 > th dose independent rect. 3 1
937 313.62 wind 3 43200 > th dose dependent rect. 15 23
960 313.83 humidity 90 14400 > th dose dependent rect. 20 6
970 313.89 wind 7 43200 > th dose independent rect. 10 1
974 313.95 radiation 1 4320 > th dose independent rect. 18 1
1000 314.12 humidity 90 14400 > th dose dependent rect. 21 4