BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0552400 Os09g0552400|Os09g0552400
         (325 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07750.1  | chr1:2404300-2405863 REVERSE LENGTH=357            126   2e-29
AT2G28680.1  | chr2:12303118-12304747 REVERSE LENGTH=357          122   2e-28

>AT1G07750.1 | chr1:2404300-2405863 REVERSE LENGTH=357
          Length = 356

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 142/347 (40%), Gaps = 34/347 (9%)

Query: 5   DMSPKAGKPLVQNDAGSYLAWSGKDQPTLAGEKLGCGLLVLKPLGFALPHYADSGKFGYV 64
           D++PK  K +   D GSY AW  ++ P L    +G   L L+  GFA+P Y+DS K  YV
Sbjct: 4   DLTPKLPKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKVAYV 63

Query: 65  LGGSAVVG-VLPVGVDARERVVRLEAADVIAMRAGEVTWC-------------------- 103
           L GS   G VLP   +  E+V+ ++  D IA+  G VTW                     
Sbjct: 64  LQGSGTAGIVLP---EKEEKVIAIKQGDSIALPFGVVTWWFNNEDPELVILFLGETHKGH 120

Query: 104 -PGDFSYFILAGPMSVXXXXXXXXXXXXXXXXXPEQAATAFRSQPAALLTRLSRKLHGVR 162
             G F+ F L G   +                          SQ    + +L       +
Sbjct: 121 KAGQFTEFYLTGTNGIFTGFSTEFVGRAWDLDE-NTVKKLVGSQTGNGIVKLDAGFKMPQ 179

Query: 163 PREHDRHGIVVNAARVPPD---STGGKTV--TAAHLPXXXXXXXXXXXXXXXXXXXVRGP 217
           P+E +R G V+N    P D     GG+ V     +LP                      P
Sbjct: 180 PKEENRAGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDAHSMCS-P 238

Query: 218 WVLRDAAAQAVYVARGSGRVQVASAGGASTLLDAEVAAGSLLVVPRYXXXXXXXXXXXXM 277
               D+A Q  Y+  GSGRVQV   G    +L+  + AGSL +VPR+            M
Sbjct: 239 GFSCDSALQVTYIVGGSGRVQVV-GGDGKRVLETHIKAGSLFIVPRF-FVVSKIADADGM 296

Query: 278 ELVSLIKSSRPAMEHFTGKGSVIGGLTPEIVQAALNVSPELVEQLRT 324
              S++ +  P   H  G  SV   L+PE++QAA  V+PE+ +  R+
Sbjct: 297 SWFSIVTTPDPIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRS 343



>AT2G28680.1 | chr2:12303118-12304747 REVERSE LENGTH=357
          Length = 356

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 142/348 (40%), Gaps = 34/348 (9%)

Query: 5   DMSPKAGKPLVQNDAGSYLAWSGKDQPTLAGEKLGCGLLVLKPLGFALPHYADSGKFGYV 64
           D+SP+  K +   D GSY AW  ++ P L    +G   L L+  G ALP Y+DS K  YV
Sbjct: 4   DLSPRLPKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKVAYV 63

Query: 65  LGGSAVVG-VLPVGVDARERVVRLEAADVIAMRAGEVTWC-------------------- 103
           L G+   G VLP   +  E+V+ ++  D IA+  G VTW                     
Sbjct: 64  LQGAGTAGIVLP---EKEEKVIAIKKGDSIALPFGVVTWWFNNEDTELVVLFLGETHKGH 120

Query: 104 -PGDFSYFILAGPMSVXXXXXXXXXXXXXXXXXPEQAATAFRSQPAALLTRLSRKLHGVR 162
             G F+ F L G   +                          SQ    + ++   L    
Sbjct: 121 KAGQFTDFYLTGSNGIFTGFSTEFVGRAWDLDE-TTVKKLVGSQTGNGIVKVDASLKMPE 179

Query: 163 PREHDRHGIVVNAARVPPD---STGGKTV--TAAHLPXXXXXXXXXXXXXXXXXXXVRGP 217
           P++ DR G V+N    P D     GG+ V     +LP                      P
Sbjct: 180 PKKGDRKGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDGHSMCS-P 238

Query: 218 WVLRDAAAQAVYVARGSGRVQVASAGGASTLLDAEVAAGSLLVVPRYXXXXXXXXXXXXM 277
               D+A Q  Y+  GSGRVQ+  A G   +L+  V AG L +VPR+            +
Sbjct: 239 GFSCDSALQVTYIVGGSGRVQIVGADG-KRVLETHVKAGVLFIVPRF-FVVSKIADSDGL 296

Query: 278 ELVSLIKSSRPAMEHFTGKGSVIGGLTPEIVQAALNVSPELVEQLRTK 325
              S++ +  P   H  G+ SV   L+PE++QAA  V PE+ +  R+K
Sbjct: 297 SWFSIVTTPDPIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSK 344



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,701,437
Number of extensions: 196649
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)