Os09g0551600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101).
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Os09g0551600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.22 | 0.646 | 13.9 | 0.138 | 1.36 | -1.95 | -1.07 | -2.31 | -0.383 | 23.3 | 26.26 | 98 | -- | -- |
| 190.4 | 0.643 | 13.9 | 0.353 | 1.36 | -2.13 | -0.87 | -- | -0.353 | 23.3 | 26.77 | 96 | -- | -- |
| 193.47 | 0.648 | 13.9 | 0.288 | 1.39 | -2.04 | -- | -1.05 | -0.376 | 23.5 | 26.8 | 97 | -- | -- |
| 193.68 | 0.648 | 13.9 | 0.385 | 1.37 | -2.16 | -- | -- | -0.361 | 23.5 | 26.9 | 86 | -- | -- |
| 282.02 | 0.786 | 13.9 | 0.54 | -- | -2.87 | -- | 0.0842 | -0.236 | -- | 25.7 | 58 | -- | -- |
| 263.46 | 0.761 | 13.9 | 0.0874 | 1.81 | -- | -0.218 | -- | -0.393 | 0.874 | -- | -- | -- | -- |
| 263.65 | 0.76 | 13.9 | 0.0951 | 1.81 | -- | -- | -- | -0.392 | 0.901 | -- | -- | -- | -- |
| 281.64 | 0.782 | 13.9 | 0.537 | -- | -2.87 | -- | -- | -0.238 | -- | 25.7 | 13 | -- | -- |
| 197.34 | 0.654 | 13.9 | -- | 1.39 | -2.08 | -- | -- | -0.413 | 23.7 | 26.98 | 86 | -- | -- |
| 467.16 | 1.01 | 13.9 | 0.162 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 263.89 | 0.76 | 13.9 | -- | 1.81 | -- | -- | -- | -0.402 | 0.903 | -- | -- | -- | -- |
| 288.92 | 0.792 | 13.9 | -- | -- | -2.8 | -- | -- | -0.299 | -- | 25.7 | 9 | -- | -- |
| 467.85 | 1.01 | 13.9 | -- | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 8 | 183.94 | temperature | 20 | 90 | > th | dose dependent | sin | 22 | NA |
| 9 | 184.05 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 25 | 185.01 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 37 | 185.79 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 52 | 186.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 88 | 187.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 128 | 189.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 156 | 189.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 269 | 191.64 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 335 | 192.74 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 351 | 192.97 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 17 |
| 416 | 193.93 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 19 |
| 420 | 193.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 595 | 196.43 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 598 | 196.44 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 788 | 198.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 849 | 199.05 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 7 |
| 858 | 199.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 920 | 199.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 951 | 199.63 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 23 |