Os09g0543400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ornithine decarboxylase (EC 4.1.1.17).
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Os09g0543400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ornithine decarboxylase (EC 4.1.1.17).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.12 | 0.554 | 6.49 | 0.882 | 1.16 | -1.65 | 0.0766 | 0.39 | -0.352 | 8.48 | 21.7 | 2083 | -- | -- |
| 139.69 | 0.55 | 6.5 | 0.825 | 1.15 | -1.65 | 0.178 | -- | -0.357 | 8.48 | 21.7 | 2072 | -- | -- |
| 139.13 | 0.549 | 6.49 | 0.884 | 1.16 | -1.64 | -- | 0.395 | -0.353 | 8.5 | 21.71 | 2072 | -- | -- |
| 139.44 | 0.55 | 6.51 | 0.768 | 1.16 | -1.66 | -- | -- | -0.38 | 8.48 | 21.73 | 2072 | -- | -- |
| 213.26 | 0.68 | 6.52 | 0.944 | -- | -1.75 | -- | 0.384 | -0.318 | -- | 21.7 | 2128 | -- | -- |
| 225.37 | 0.704 | 6.62 | -0.000851 | 1.26 | -- | 0.122 | -- | -0.907 | 8.65 | -- | -- | -- | -- |
| 225.42 | 0.703 | 6.62 | 0.003 | 1.26 | -- | -- | -- | -0.908 | 8.64 | -- | -- | -- | -- |
| 213.35 | 0.68 | 6.53 | 0.845 | -- | -1.8 | -- | -- | -0.322 | -- | 21.78 | 2127 | -- | -- |
| 149.61 | 0.57 | 6.53 | -- | 1.29 | -1.38 | -- | -- | -0.507 | 8.46 | 22.2 | 1501 | -- | -- |
| 314.98 | 0.829 | 6.66 | 0.00647 | -- | -- | -- | -- | -0.897 | -- | -- | -- | -- | -- |
| 225.42 | 0.702 | 6.62 | -- | 1.26 | -- | -- | -- | -0.908 | 8.64 | -- | -- | -- | -- |
| 198.03 | 0.655 | 6.54 | -- | -- | -1.54 | -- | -- | -0.476 | -- | 21.9 | 727 | -- | -- |
| 314.98 | 0.828 | 6.66 | -- | -- | -- | -- | -- | -0.897 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.64 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 5 | 127.92 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 13 | 132.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 25 | 136.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 34 | 138.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 59 | 140.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 81 | 141.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 85 | 141.93 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 120 | 143.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 124 | 143.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 127 | 143.64 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 179 | 144.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 254 | 146.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 287 | 146.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 304 | 146.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 146.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 338 | 147.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 385 | 148.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 410 | 148.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 422 | 148.47 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 576 | 149.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 662 | 150.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 701 | 150.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 709 | 150.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 710 | 150.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 723 | 150.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 775 | 150.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 785 | 150.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 985 | 151.44 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |