BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0543400 Os09g0543400|Os09g0543400
         (408 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11880.1  | chr5:3827806-3829942 REVERSE LENGTH=490             61   1e-09
AT3G14390.1  | chr3:4806771-4808954 FORWARD LENGTH=485             60   3e-09

>AT5G11880.1 | chr5:3827806-3829942 REVERSE LENGTH=490
          Length = 489

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 139/386 (36%), Gaps = 44/386 (11%)

Query: 34  IRDIVAGGARSAFHVFDLAKVVDLHRGWRRALPDVRPC--YAVKCNPDXXXXXXXXXXXX 91
           ++DI+    +  F+++   ++      ++ AL  VR    YA+K N +            
Sbjct: 87  VQDIMETVEKRPFYLYSKPQITRNLEAYKEALEGVRSVIGYAIKANNNLKILEHLRSLGC 146

Query: 92  XFDCASRAEIEAVLALGVRPATIVYANPCKPEAHLEYAAEVGVNLTTYDSEEEVAKV--- 148
                S  E+   L  G  P   ++    K    L  AA+ GV     DSE ++  +   
Sbjct: 147 GAVLVSGNELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGV-FVNVDSEFDLNNIVEA 205

Query: 149 -RRCHPRCELLLRIKAPD----------SGDAKVDLGLKYGANPDEVLPLLRAAQREGVA 197
            R    +  +LLRI  PD          +G+     G++        L  ++A  +E + 
Sbjct: 206 SRISGKQVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDEVKAHPKE-LK 262

Query: 198 VAGVSFHVGSGASRADVYRGXXXXXXXXXXXXXXLGMPPMRVLDIGGG-----FMAGRTF 252
           + G   H+GS  ++ D++R                G   +  L+IGGG     + AG   
Sbjct: 263 LVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFE-VSYLNIGGGLGIDYYHAGAVL 321

Query: 253 DEAAAVINRALERHFG-DLPCVEVIGEPGRYFAETAFTLAARVIGKRTRGELREYWIDDG 311
                +IN   E     DL    +I EPGR            V G +T G      ID  
Sbjct: 322 PTPMDLINTVRELVLSRDL---NLIIEPGRSLIANTCCFVNHVTGVKTNGTKNFIVIDGS 378

Query: 312 LYGSLNCILMDHY----VPRPRPLXXXXXXXXXXXXXXXXSTVFGPTCDSLDTVVTGYQL 367
           +   +   L D Y    +  P P                   V GP C+S D +    +L
Sbjct: 379 MAELIRPSLYDAYQHIELVSPTP----------PEAEVTKFDVVGPVCESADFLGKDREL 428

Query: 368 PEMSVGDWLVFDDMGAYTTAAGSNFN 393
           P    G  LV  D GAY  +  S +N
Sbjct: 429 PTPPQGAGLVVHDAGAYCMSMASTYN 454



>AT3G14390.1 | chr3:4806771-4808954 FORWARD LENGTH=485
          Length = 484

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 137/386 (35%), Gaps = 44/386 (11%)

Query: 34  IRDIVAGGARSAFHVFDLAKVVDLHRGWRRALPDVRPC--YAVKCNPDXXXXXXXXXXXX 91
           + DI+    R  F+++   ++      ++ AL  V     YA+K N +            
Sbjct: 82  VEDIMESVERRPFYLYSKPQITRNLEAYKEALEGVSSVIGYAIKANNNLKILEHLRSLGC 141

Query: 92  XFDCASRAEIEAVLALGVRPATIVYANPCKPEAHLEYAAEVGVNLTTYDSEEEVAKV--- 148
                S  E+   L  G  P   ++    K    L  AA+ GV     DSE ++  +   
Sbjct: 142 GAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGV-FVNVDSEFDLNNIVEA 200

Query: 149 -RRCHPRCELLLRIKAPD----------SGDAKVDLGLKYGANPDEVLPLLRAAQREGVA 197
            R    +  +LLRI  PD          +G+     G++        L  ++A  +E + 
Sbjct: 201 SRISGKQVNVLLRIN-PDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDQVKAHPKE-LK 257

Query: 198 VAGVSFHVGSGASRADVYRGXXXXXXXXXXXXXXLGMPPMRVLDIGGG-----FMAGRTF 252
           + G   H+GS  ++ D++R                G   +  L+IGGG     + AG   
Sbjct: 258 LVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFE-VSYLNIGGGLGIDYYHAGAVL 316

Query: 253 DEAAAVINRALERHFG-DLPCVEVIGEPGRYFAETAFTLAARVIGKRTRGELREYWIDDG 311
                +IN   E     DL    +I EPGR            V G +T G      ID  
Sbjct: 317 PTPMDLINTVRELVLSRDL---NLIIEPGRSLIANTCCFVNHVTGVKTNGTKNFIVIDGS 373

Query: 312 LYGSLNCILMDHY----VPRPRPLXXXXXXXXXXXXXXXXSTVFGPTCDSLDTVVTGYQL 367
           +   +   L D Y    +  P P                   V GP C+S D +    +L
Sbjct: 374 MAELIRPSLYDAYQHIELVSPPP----------AEAEVTKFDVVGPVCESADFLGKDREL 423

Query: 368 PEMSVGDWLVFDDMGAYTTAAGSNFN 393
           P    G  LV  D GAY  +  S +N
Sbjct: 424 PTPPQGAGLVVHDAGAYCMSMASTYN 449



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,886,437
Number of extensions: 289123
Number of successful extensions: 520
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)