Os09g0541600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1279 domain containing protein.
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Os09g0541600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1279 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.25 | 0.316 | 8.65 | 1.17 | 0.986 | -0.979 | 0.247 | 0.272 | 0.426 | 20 | 78.66 | 1367 | -- | -- |
| 45.32 | 0.314 | 8.65 | 1.15 | 0.99 | -0.962 | 0.236 | -- | 0.423 | 20 | 78.7 | 1366 | -- | -- |
| 45.43 | 0.314 | 8.65 | 1.16 | 0.986 | -0.98 | -- | 0.257 | 0.426 | 20 | 78.72 | 1367 | -- | -- |
| 45.44 | 0.314 | 8.65 | 1.14 | 0.998 | -0.951 | -- | -- | 0.422 | 20.1 | 78.22 | 1320 | -- | -- |
| 98.1 | 0.461 | 8.62 | 1.15 | -- | -1.1 | -- | 0.308 | 0.419 | -- | 78.77 | 1388 | -- | -- |
| 56.67 | 0.353 | 8.66 | 1.1 | 1.01 | -- | 0.286 | -- | 0.377 | 19.8 | -- | -- | -- | -- |
| 56.9 | 0.353 | 8.66 | 1.09 | 1.01 | -- | -- | -- | 0.377 | 19.8 | -- | -- | -- | -- |
| 98.18 | 0.461 | 8.62 | 1.13 | -- | -1.08 | -- | -- | 0.413 | -- | 78.65 | 1388 | -- | -- |
| 76.45 | 0.407 | 8.66 | -- | 0.985 | -0.967 | -- | -- | 0.329 | 19.8 | 83.02 | 1502 | -- | -- |
| 112.57 | 0.496 | 8.63 | 1.08 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 88.22 | 0.439 | 8.69 | -- | 1.01 | -- | -- | -- | 0.255 | 19.9 | -- | -- | -- | -- |
| 128.7 | 0.528 | 8.65 | -- | -- | -1 | -- | -- | 0.311 | -- | 83 | 1428 | -- | -- |
| 143.22 | 0.559 | 8.66 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 3 | 43.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 7 | 44.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 13 | 44.87 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 26 | 45.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 31 | 45.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 49 | 45.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 51 | 45.20 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 79 | 45.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 83 | 45.37 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 84 | 45.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 99 | 45.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 110 | 45.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 112 | 45.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 116 | 45.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 144 | 45.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 182 | 45.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 194 | 45.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 230 | 45.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 272 | 45.87 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 276 | 45.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 299 | 45.91 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 314 | 45.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 328 | 45.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 386 | 46.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 404 | 46.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 425 | 46.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 428 | 46.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 440 | 46.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 451 | 46.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 454 | 46.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 460 | 46.41 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 491 | 46.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 503 | 46.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 506 | 46.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 511 | 46.54 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 520 | 46.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 523 | 46.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 537 | 46.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 554 | 46.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 614 | 46.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 670 | 46.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 699 | 47.00 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 732 | 47.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 742 | 47.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 747 | 47.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 768 | 47.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 784 | 47.19 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 833 | 47.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 887 | 47.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 910 | 47.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 940 | 47.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 965 | 47.34 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |