BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0541600 Os09g0541600|AK062762
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20940.1  | chr2:9002264-9002653 REVERSE LENGTH=130            113   3e-26

>AT2G20940.1 | chr2:9002264-9002653 REVERSE LENGTH=130
          Length = 129

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 10/132 (7%)

Query: 4   AARMKELMRKYGKVAIGVHLSVSCASITGLYVAIDNNVDVDAIFRRIGISPSGGVAGDEA 63
           A R+KE+++KYGKVA+GVH SVS  SI+G Y+AI NNVDV+++  +  I          +
Sbjct: 2   ATRLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQI------PWFSS 55

Query: 64  AETPTPSAAVPEEAP----PRNRTREXXXXXXXXXXXXXMCNKALLPVRVPVTLALTPPV 119
            E P PS  +  E        N+T++             +CNKAL P+RVP+T+ALTPP+
Sbjct: 56  KENPNPSLDLKLEEQGSVTSDNKTKQLAKSAGGALALAVLCNKALFPIRVPITMALTPPI 115

Query: 120 ARFLARWKLVKT 131
           ARFL + K++KT
Sbjct: 116 ARFLRQRKILKT 127



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,519,476
Number of extensions: 87107
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)