Os09g0541500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin-like domain containing protein.
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Os09g0541500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.78 | 0.44 | 2.8 | -0.146 | 0.122 | -0.29 | -0.575 | 2.08 | 0.175 | 1.57 | 61 | 168 | -- | -- |
| 94.19 | 0.452 | 2.79 | -0.114 | 0.12 | -0.142 | -0.111 | -- | 0.154 | 1.14 | 60.26 | 110 | -- | -- |
| 88.94 | 0.439 | 2.8 | -0.142 | 0.116 | -0.267 | -- | 1.94 | 0.174 | 0.779 | 61.01 | 168 | -- | -- |
| 94.2 | 0.452 | 2.79 | -0.111 | 0.118 | -0.14 | -- | -- | 0.154 | 0.956 | 61.48 | 111 | -- | -- |
| 89.78 | 0.441 | 2.8 | -0.124 | -- | -0.236 | -- | 1.77 | 0.18 | -- | 61 | 168 | -- | -- |
| 94.74 | 0.456 | 2.8 | -0.107 | 0.089 | -- | -0.08 | -- | 0.138 | 24 | -- | -- | -- | -- |
| 94.77 | 0.456 | 2.8 | -0.104 | 0.0895 | -- | -- | -- | 0.138 | 23.7 | -- | -- | -- | -- |
| 94.97 | 0.454 | 2.79 | -0.106 | -- | -0.0935 | -- | -- | 0.151 | -- | 61.07 | 156 | -- | -- |
| 94.52 | 0.453 | 2.79 | -- | 0.115 | -0.135 | -- | -- | 0.166 | 0.875 | 61.93 | 111 | -- | -- |
| 95.27 | 0.456 | 2.8 | -0.101 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 95.05 | 0.456 | 2.8 | -- | 0.0883 | -- | -- | -- | 0.15 | 23.7 | -- | -- | -- | -- |
| 95.27 | 0.455 | 2.79 | -- | -- | -0.0893 | -- | -- | 0.162 | -- | 61.56 | 145 | -- | -- |
| 95.54 | 0.456 | 2.79 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.44 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 18 | 74.44 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 113 | 74.97 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 239 | 75.96 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 256 | 76.30 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 299 | 77.13 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 356 | 77.84 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 463 | 78.61 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 466 | 78.72 | humidity | 60 | 90 | > th | dose independent | sin | 14 | NA |
| 483 | 78.96 | humidity | 60 | 10 | < th | dose independent | sin | 13 | NA |
| 484 | 78.97 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 488 | 79.00 | humidity | 60 | 10 | > th | dose independent | sin | 13 | NA |
| 540 | 79.21 | humidity | 60 | 90 | < th | dose independent | sin | 14 | NA |
| 585 | 79.61 | humidity | 60 | 10 | < th | dose dependent | sin | 13 | NA |
| 623 | 80.35 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 3 |
| 707 | 81.30 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 15 | 3 |
| 710 | 81.37 | humidity | 60 | 30 | < th | dose dependent | rect. | 12 | 4 |
| 740 | 81.72 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |