BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0541500 Os09g0541500|AK060244
         (143 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20930.1  | chr2:9000790-9001656 REVERSE LENGTH=141            245   7e-66
AT1G80500.1  | chr1:30271195-30272431 FORWARD LENGTH=136           52   1e-07

>AT2G20930.1 | chr2:9000790-9001656 REVERSE LENGTH=141
          Length = 140

 Score =  245 bits (625), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 125/138 (90%)

Query: 1   MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRNAPALNETFLG 60
           MIVCVAVVGHQNNPLY+QSFT+ADDALKLHH+VHCSLDVI+ERVNNPK++   LNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARNFFRKFHAAYVDAVSNPFHVPGKK 120
           LLYPT NYKVYGYLTNTKVKFI+VTTDLDV+D D R+FFRKFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 IASRSFGARVSTIVKSFG 138
           I SR+F   VS IV S+G
Sbjct: 121 ITSRTFAQTVSNIVGSYG 138



>AT1G80500.1 | chr1:30271195-30272431 FORWARD LENGTH=136
          Length = 135

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 15/139 (10%)

Query: 4   CVAVVGHQNNPLY---LQSFTEADDALKLHH-VVHCSLDVIDERVNNPKRNAPALNETFL 59
           C  +VG  + P+Y   + S  + +DA +LH  ++H +LDV+ +        A   +  FL
Sbjct: 6   CFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDL-------AWTTSAMFL 58

Query: 60  GLLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADA-RNFFRKFHAAYVDAVSNPFHVPG 118
             +    +  V  Y+T    + +++    D ++ D  ++FF++ H  Y+  + NP ++PG
Sbjct: 59  KSVDRFNDLVVSVYVTAGHTRLMLLH---DSRNEDGIKSFFQEVHELYIKILLNPLYLPG 115

Query: 119 KKIASRSFGARVSTIVKSF 137
            +I S  F  +V  + + +
Sbjct: 116 SRITSSHFDTKVRALARKY 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,104,277
Number of extensions: 119948
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 54
Effective length of database: 8,666,545
Effective search space: 467993430
Effective search space used: 467993430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)