Os09g0534800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation factor IIB (General transcription factor TFIIB).
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Os09g0534800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation factor IIB (General transcription factor TFIIB).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.56 | 0.185 | 12 | 0.129 | 0.226 | 0.243 | 0.141 | -0.106 | 0.271 | 2.97 | 71.3 | 1300 | -- | -- |
| 15.59 | 0.184 | 12 | 0.115 | 0.227 | 0.24 | 0.153 | -- | 0.266 | 2.95 | 71.85 | 1299 | -- | -- |
| 15.63 | 0.184 | 12 | 0.129 | 0.226 | 0.243 | -- | -0.133 | 0.272 | 2.95 | 71.33 | 1296 | -- | -- |
| 15.66 | 0.184 | 12 | 0.105 | 0.226 | 0.237 | -- | -- | 0.26 | 2.96 | 72.3 | 1297 | -- | -- |
| 17.4 | 0.195 | 12 | 0.0831 | -- | 0.15 | -- | -0.101 | 0.236 | -- | 73.95 | 1663 | -- | -- |
| 17.62 | 0.197 | 12 | 0.0622 | 0.19 | -- | 0.11 | -- | 0.229 | 3.22 | -- | -- | -- | -- |
| 17.66 | 0.197 | 12 | 0.06 | 0.19 | -- | -- | -- | 0.229 | 3.2 | -- | -- | -- | -- |
| 17.43 | 0.194 | 12 | 0.106 | -- | 0.277 | -- | -- | 0.263 | -- | 73.46 | 1663 | -- | -- |
| 15.96 | 0.186 | 12 | -- | 0.224 | 0.235 | -- | -- | 0.252 | 2.98 | 72 | 1299 | -- | -- |
| 19.7 | 0.207 | 12 | 0.0681 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 17.75 | 0.197 | 12 | -- | 0.191 | -- | -- | -- | 0.222 | 3.2 | -- | -- | -- | -- |
| 17.63 | 0.196 | 12 | -- | -- | 0.147 | -- | -- | 0.226 | -- | 73.14 | 1666 | -- | -- |
| 19.83 | 0.208 | 12 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 5 | 15.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 11 | 15.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 15 | 15.35 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 17 | 15.36 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 25 | 15.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 37 | 15.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 48 | 15.47 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 56 | 15.50 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 62 | 15.51 | temperature | 25 | 30 | < th | dose dependent | sin | 12 | NA |
| 67 | 15.52 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 9 |
| 71 | 15.52 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 83 | 15.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 88 | 15.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 91 | 15.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 96 | 15.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 105 | 15.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 167 | 15.66 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 218 | 15.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 228 | 15.69 | humidity | 60 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 231 | 15.70 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 252 | 15.71 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 294 | 15.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 297 | 15.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 346 | 15.75 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 8 |
| 349 | 15.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 375 | 15.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 390 | 15.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 397 | 15.77 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 8 |
| 406 | 15.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 471 | 15.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 494 | 15.79 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 11 |
| 510 | 15.79 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 522 | 15.80 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 600 | 15.80 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 619 | 15.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 625 | 15.81 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 631 | 15.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 696 | 15.83 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 9 |
| 708 | 15.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 737 | 15.84 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 740 | 15.84 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 812 | 15.85 | humidity | 70 | 1440 | < th | dose independent | sin | 21 | NA |
| 894 | 15.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 22 |