Os09g0530000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhodanese-like domain containing protein.
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Os09g0530000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhodanese-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.27 | 0.576 | 12.3 | -0.203 | 5.05 | -1.48 | 0.468 | 0.853 | -0.202 | 16.5 | 20.2 | 96 | 13 | 17.1 |
| 154.41 | 0.579 | 12.3 | -0.334 | 5.06 | -1.44 | 0.615 | -- | -0.23 | 16.4 | 20.21 | 101 | 13 | 17.1 |
| 150.72 | 0.572 | 12.3 | -0.188 | 5.05 | -1.47 | -- | 0.928 | -0.19 | 16.5 | 20.21 | 99 | 13 | 17.2 |
| 155.14 | 0.58 | 12.3 | -0.369 | 5.07 | -1.47 | -- | -- | -0.237 | 16.5 | 20.22 | 104 | 12.9 | 17.1 |
| 256.76 | 0.746 | 12.3 | -0.734 | -- | -4.93 | -- | -0.305 | -0.386 | -- | 7.194 | 820 | 12.8 | 16.2 |
| 281.28 | 0.786 | 12.3 | -0.671 | 5.11 | -- | 0.419 | -- | -0.5 | 15.6 | -- | -- | -- | -- |
| 281.82 | 0.786 | 12.3 | -0.664 | 5.11 | -- | -- | -- | -0.497 | 15.5 | -- | -- | -- | -- |
| 255.5 | 0.744 | 12.3 | -0.642 | -- | -4.89 | -- | -- | -0.468 | -- | 7.24 | 822 | 12.7 | 16.2 |
| 158.62 | 0.587 | 12.3 | -- | 5.05 | -1.52 | -- | -- | -0.197 | 16.5 | 20.2 | 111 | 12.9 | 17.2 |
| 1737.14 | 1.95 | 12.3 | -0.879 | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
| 293.46 | 0.801 | 12.3 | -- | 5.12 | -- | -- | -- | -0.424 | 15.5 | -- | -- | -- | -- |
| 266.14 | 0.76 | 12.3 | -- | -- | -4.94 | -- | -- | -0.402 | -- | 7.219 | 828 | 12.7 | 16.1 |
| 1757.52 | 1.96 | 12.3 | -- | -- | -- | -- | -- | -0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.41 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 17 |
| 2 | 157.41 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 11 |
| 3 | 158.54 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 18 |
| 5 | 158.64 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 15 |
| 8 | 159.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 27 | 165.24 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 13 |
| 65 | 173.53 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 7 |
| 68 | 173.70 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 13 |
| 84 | 176.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 86 | 176.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 94 | 177.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 122 | 180.07 | temperature | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 139 | 181.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 11 |
| 149 | 181.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 200 | 185.00 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 3 |
| 230 | 186.29 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 235 | 186.67 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 8 |
| 245 | 187.12 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 4 |
| 250 | 187.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 259 | 187.73 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 260 | 187.75 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 7 |
| 328 | 189.85 | temperature | 20 | 30 | < th | dose independent | sin | 12 | NA |
| 359 | 190.97 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 3 |
| 425 | 192.65 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 4 |
| 465 | 193.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 483 | 194.42 | temperature | 20 | 30 | < th | dose independent | rect. | 20 | 12 |
| 502 | 194.98 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 513 | 195.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 523 | 195.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 621 | 196.85 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 3 |
| 768 | 199.52 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 852 | 200.62 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 4 |
| 995 | 202.19 | humidity | 80 | 90 | > th | dose dependent | rect. | 3 | 4 |