Os09g0529900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HpcH/HpaI aldolase family protein.
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Os09g0529900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HpcH/HpaI aldolase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.02 | 0.532 | 8.86 | 0.119 | 4.53 | -2.41 | -0.251 | -2.44 | -0.289 | 14.2 | 31.44 | 226 | 2.42 | 18 |
| 135.8 | 0.543 | 8.87 | -0.0814 | 4.73 | -2.28 | -0.424 | -- | -0.213 | 14.3 | 35.44 | 202 | 2.62 | 18.4 |
| 128.11 | 0.527 | 8.85 | 0.118 | 4.56 | -2.36 | -- | -2.49 | -0.267 | 14.2 | 31.91 | 219 | 2.52 | 18 |
| 137.64 | 0.546 | 8.87 | -0.0524 | 4.87 | -2.33 | -- | -- | -0.242 | 14.3 | 37.69 | 209 | 2.68 | 18.4 |
| 720.38 | 1.25 | 9.04 | -0.842 | -- | -5.48 | -- | -1.99 | -1.04 | -- | 31.59 | 55 | 1.9 | 24 |
| 214.13 | 0.686 | 8.86 | 0.258 | 4.27 | -- | -0.43 | -- | -0.126 | 14.8 | -- | -- | -- | -- |
| 214.76 | 0.686 | 8.86 | 0.248 | 4.27 | -- | -- | -- | -0.129 | 14.8 | -- | -- | -- | -- |
| 720.95 | 1.25 | 9.07 | -1.08 | -- | -6.24 | -- | -- | -1.07 | -- | 41.23 | 27 | 1.47 | 24 |
| 137.2 | 0.546 | 8.87 | -- | 5.04 | -2.46 | -- | -- | -0.235 | 14.3 | 38.84 | 236 | 2.48 | 18.1 |
| 1269.59 | 1.66 | 8.88 | 0.0663 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 216.39 | 0.688 | 8.87 | -- | 4.27 | -- | -- | -- | -0.156 | 14.8 | -- | -- | -- | -- |
| 750.29 | 1.28 | 9.04 | -- | -- | -5.85 | -- | -- | -0.914 | -- | 52.01 | 13 | 1.72 | 24 |
| 1269.71 | 1.66 | 8.88 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 6 | 136.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 17 | 141.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 32 | 143.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 60 | 147.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 62 | 147.72 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 73 | 148.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 99 | 150.66 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 101 | 150.71 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 104 | 150.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 109 | 151.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 282 | 157.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 314 | 158.16 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 397 | 159.93 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 19 |
| 459 | 161.40 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 18 |
| 462 | 161.54 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 471 | 161.65 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 495 | 162.07 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 18 |
| 523 | 162.67 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 549 | 162.95 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 617 | 163.85 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 665 | 164.45 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 10 |
| 700 | 164.98 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 736 | 165.36 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 740 | 165.40 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 751 | 165.50 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 849 | 166.35 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 850 | 166.39 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 8 |
| 863 | 166.46 | radiation | 30 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 885 | 166.62 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 924 | 166.94 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 17 |
| 959 | 167.34 | humidity | 50 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 982 | 167.57 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |