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Os09g0529400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0189) R2 : 0.775
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.95 (0.0494) R2dC : 0.776 R2C : 0.77
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.112 (0.0397) R2dN8 : 0.00512 R2N8 : -0.00153
σ : 0.356
deviance : 57.81
__
_____
C
peak time of C : 5.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.9 0.3 9.75 0.785 1.67 -0.904 -0.745 2.3 0.168 5.39 20.1 486 -- --
43.48 0.307 9.81 0.319 1.68 -0.798 -1.4 -- 0.0316 5.72 19.44 249 -- --
41.96 0.302 9.73 0.91 1.66 -0.932 -- 2.96 0.206 5.39 20.32 478 -- --
47.59 0.321 9.8 0.349 1.78 -0.847 -- -- 0.0408 5.25 16.19 667 -- --
123.25 0.517 9.72 1.33 -- -2.48 -- 5.68 0.357 -- 24.21 354 -- --
54.25 0.345 9.83 0.13 1.96 -- -1.13 -- -0.103 5.56 -- -- -- --
57.39 0.355 9.83 0.125 1.95 -- -- -- -0.0984 5.55 -- -- -- --
138.98 0.549 9.81 0.528 -- -2.01 -- -- 0.149 -- 24.2 330 -- --
50.28 0.33 9.81 -- 1.8 -0.667 -- -- -0.0174 5.32 16.9 649 -- --
255.47 0.747 9.85 0.189 -- -- -- -- -0.0511 -- -- -- -- --
57.81 0.356 9.83 -- 1.95 -- -- -- -0.112 5.55 -- -- -- --
146.02 0.563 9.83 -- -- -1.94 -- -- 0.0777 -- 24.3 327 -- --
256.41 0.747 9.86 -- -- -- -- -- -0.0721 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.30 radiation 1 720 < th dose dependent sin 12 NA
2 39.37 radiation 1 720 < th dose dependent rect. 17 14
3 39.44 temperature 10 720 > th dose dependent rect. 21 20
5 39.48 radiation 1 720 < th dose dependent rect. 17 16
13 39.77 humidity 90 43200 > th dose independent rect. 22 1
14 39.77 temperature 20 720 > th dose dependent rect. 21 20
20 39.90 temperature 20 720 > th dose dependent rect. 14 19
21 39.91 humidity 90 43200 > th dose dependent rect. 5 2
24 39.94 humidity 90 43200 < th dose independent rect. 19 4
32 40.00 humidity 90 43200 > th dose independent rect. 20 3
35 40.00 temperature 10 720 > th dose dependent rect. 13 20
38 40.01 humidity 90 14400 > th dose independent rect. 18 11
39 40.01 temperature 20 1440 > th dose dependent rect. 17 5
54 40.12 humidity 90 14400 < th dose independent rect. 18 10
56 40.13 humidity 90 43200 < th dose independent rect. 22 1
59 40.13 humidity 90 43200 > th dose dependent rect. 4 6
61 40.15 radiation 1 14400 > th dose independent rect. 18 1
68 40.15 humidity 90 14400 > th dose independent rect. 20 8
85 40.18 humidity 90 43200 > th dose independent rect. 3 22
88 40.19 humidity 90 43200 > th dose independent rect. 4 6
95 40.22 humidity 90 43200 > th dose independent rect. 3 8
97 40.22 humidity 90 14400 > th dose dependent rect. 21 5
105 40.24 temperature 20 720 > th dose dependent rect. 20 13
113 40.26 temperature 20 1440 > th dose dependent rect. 18 1
116 40.26 temperature 10 720 > th dose dependent rect. 21 12
120 40.28 humidity 90 43200 > th dose independent sin 4 NA
123 40.28 humidity 90 43200 < th dose independent rect. 5 21
134 40.29 humidity 90 43200 < th dose independent rect. 2 21
137 40.30 humidity 90 43200 > th dose independent rect. 5 2
138 40.30 humidity 90 43200 > th dose independent rect. 2 11
144 40.30 humidity 90 43200 > th dose dependent rect. 3 10
196 40.37 humidity 90 43200 > th dose independent rect. 17 20
229 40.40 temperature 20 270 > th dose dependent rect. 3 22
238 40.41 humidity 90 43200 > th dose dependent rect. 3 16
243 40.42 humidity 90 43200 > th dose dependent sin 3 NA
254 40.43 humidity 90 43200 > th dose dependent rect. 3 20
278 40.46 humidity 90 43200 > th dose independent no NA NA
288 40.46 temperature 20 1440 > th dose dependent rect. 16 15
291 40.47 humidity 90 43200 > th dose independent rect. 9 1
302 40.48 humidity 90 43200 < th dose independent rect. 9 1
310 40.48 humidity 90 43200 > th dose independent rect. 22 23
311 40.48 humidity 90 14400 > th dose dependent rect. 22 3
321 40.49 temperature 10 720 > th dose dependent rect. 5 4
340 40.51 humidity 90 43200 > th dose independent rect. 11 23
368 40.53 humidity 90 43200 < th dose independent rect. 15 23
373 40.54 humidity 90 43200 < th dose independent sin 3 NA
400 40.56 humidity 90 43200 > th dose independent rect. 8 23
454 40.59 humidity 90 43200 < th dose independent rect. 22 23
459 40.60 humidity 90 43200 < th dose independent no NA NA
483 40.62 humidity 90 43200 < th dose independent sin 18 NA
484 40.62 humidity 90 43200 < th dose independent rect. 3 9
514 40.65 radiation 1 43200 < th dose independent rect. 18 4
517 40.65 humidity 90 43200 < th dose independent rect. 4 7
520 40.65 humidity 90 43200 > th dose independent rect. 11 14
535 40.66 radiation 1 43200 < th dose independent rect. 18 2
567 40.68 temperature 20 1440 > th dose dependent sin 13 NA
579 40.69 humidity 90 43200 < th dose independent rect. 11 23
613 40.71 humidity 90 14400 > th dose dependent sin 13 NA
622 40.72 humidity 90 43200 < th dose independent rect. 2 11
651 40.74 humidity 90 14400 > th dose independent sin 12 NA
652 40.74 humidity 90 43200 > th dose independent sin 18 NA
664 40.74 radiation 1 14400 < th dose dependent rect. 18 5
680 40.75 radiation 1 14400 < th dose dependent rect. 18 2
696 40.76 humidity 90 43200 < th dose independent rect. 8 23
709 40.76 humidity 90 43200 > th dose dependent rect. 16 21
747 40.79 humidity 90 43200 > th dose dependent rect. 19 4
757 40.80 humidity 90 43200 > th dose dependent no NA NA
783 40.81 humidity 90 43200 > th dose dependent rect. 21 23
808 40.83 humidity 80 43200 > th dose dependent rect. 10 1
809 40.83 humidity 90 14400 > th dose dependent rect. 23 1
847 40.85 humidity 90 43200 > th dose dependent rect. 11 23
889 40.87 humidity 90 43200 > th dose dependent rect. 9 23
930 40.90 radiation 1 14400 < th dose dependent rect. 5 1
943 40.91 humidity 90 14400 < th dose independent sin 13 NA
974 40.92 radiation 1 1440 < th dose dependent rect. 18 6
998 40.94 humidity 80 43200 < th dose independent rect. 12 1