Os09g0527100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding protein.
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Os09g0527100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.36 | 0.53 | 9.95 | -2.51 | 0.486 | 0.978 | 0.0486 | -0.946 | 0.135 | 20.3 | 21.7 | 1527 | -- | -- |
| 129.34 | 0.53 | 9.92 | -2.22 | 0.492 | 1.01 | 0.0287 | -- | 0.199 | 20.3 | 21.8 | 1499 | -- | -- |
| 127.36 | 0.526 | 9.95 | -2.51 | 0.484 | 0.98 | -- | -0.953 | 0.133 | 20.3 | 21.75 | 1542 | -- | -- |
| 129.34 | 0.53 | 9.92 | -2.23 | 0.49 | 1.02 | -- | -- | 0.2 | 20.3 | 21.8 | 1500 | -- | -- |
| 137.22 | 0.546 | 9.94 | -2.36 | -- | 0.885 | -- | -0.71 | 0.166 | -- | 21.8 | 762 | -- | -- |
| 162.07 | 0.597 | 9.85 | -1.81 | 0.486 | -- | 0.0668 | -- | 0.508 | 20.5 | -- | -- | -- | -- |
| 162.08 | 0.596 | 9.85 | -1.81 | 0.486 | -- | -- | -- | 0.508 | 20.5 | -- | -- | -- | -- |
| 137.7 | 0.547 | 9.9 | -2.15 | -- | 0.949 | -- | -- | 0.209 | -- | 21.81 | 797 | -- | -- |
| 242.69 | 0.726 | 9.9 | -- | 0.292 | 0.547 | -- | -- | 0.409 | 19.5 | 22.3 | 892 | -- | -- |
| 175.31 | 0.619 | 9.83 | -1.82 | -- | -- | -- | -- | 0.504 | -- | -- | -- | -- | -- |
| 248.71 | 0.738 | 9.8 | -- | 0.495 | -- | -- | -- | 0.71 | 20.2 | -- | -- | -- | -- |
| 248.93 | 0.735 | 9.81 | -- | -- | 0.535 | -- | -- | 0.565 | -- | 22.4 | 780 | -- | -- |
| 262.22 | 0.756 | 9.79 | -- | -- | -- | -- | -- | 0.705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.04 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 2 | 125.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 3 | 125.26 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 4 | 125.32 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 9 | 125.61 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 26 | 126.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 31 | 126.42 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 32 | 126.44 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 34 | 126.46 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 43 | 126.59 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 44 | 126.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 79 | 126.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 108 | 127.10 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 122 | 127.19 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 124 | 127.21 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 148 | 127.33 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 169 | 127.45 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 206 | 127.64 | temperature | 25.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 219 | 127.71 | temperature | 25.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 226 | 127.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 279 | 127.99 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 346 | 128.30 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 365 | 128.37 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 375 | 128.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 377 | 128.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 389 | 128.47 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 407 | 128.53 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 422 | 128.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 423 | 128.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 466 | 128.72 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 495 | 128.80 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 497 | 128.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 501 | 128.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 504 | 128.82 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 509 | 128.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 545 | 128.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 548 | 128.94 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 557 | 128.96 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 588 | 129.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 616 | 129.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 726 | 129.36 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 757 | 129.44 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 758 | 129.44 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 765 | 129.46 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 841 | 129.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 853 | 129.65 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 858 | 129.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 861 | 129.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 865 | 129.68 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 881 | 129.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 898 | 129.76 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 949 | 129.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 977 | 129.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |