FiT-DB / Search/ Help/ Sample detail
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Os09g0521500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.22 | 0.206 | 11.2 | 0.0685 | 0.31 | -0.491 | 0.035 | -0.419 | -0.103 | 9.81 | 80 | 4228 | -- | -- |
| 19.35 | 0.205 | 11.2 | 0.0285 | 0.322 | -0.522 | 0.0499 | -- | -0.119 | 9.88 | 80.52 | 4120 | -- | -- |
| 19.22 | 0.204 | 11.2 | 0.0678 | 0.312 | -0.494 | -- | -0.402 | -0.102 | 9.79 | 80.11 | 4207 | -- | -- |
| 19.34 | 0.205 | 11.2 | 0.0411 | 0.32 | -0.507 | -- | -- | -0.118 | 9.83 | 81.63 | 4164 | -- | -- |
| 24.65 | 0.231 | 11.2 | 0.0741 | -- | -0.507 | -- | -0.507 | -0.122 | -- | 80.01 | 4399 | -- | -- |
| 22.19 | 0.221 | 11.2 | 0.00343 | 0.309 | -- | 0.0243 | -- | 0.0512 | 9.83 | -- | -- | -- | -- |
| 22.19 | 0.221 | 11.2 | 0.00429 | 0.309 | -- | -- | -- | 0.0512 | 9.81 | -- | -- | -- | -- |
| 24.86 | 0.232 | 11.2 | 0.0354 | -- | -0.521 | -- | -- | -0.143 | -- | 82 | 4366 | -- | -- |
| 19.37 | 0.205 | 11.2 | -- | 0.318 | -0.51 | -- | -- | -0.125 | 9.82 | 81.72 | 4146 | -- | -- |
| 27.89 | 0.247 | 11.2 | 0.00114 | -- | -- | -- | -- | 0.0514 | -- | -- | -- | -- | -- |
| 22.19 | 0.22 | 11.2 | -- | 0.309 | -- | -- | -- | 0.0508 | 9.81 | -- | -- | -- | -- |
| 24.89 | 0.232 | 11.2 | -- | -- | -0.517 | -- | -- | -0.145 | -- | 81.97 | 4368 | -- | -- |
| 27.89 | 0.247 | 11.2 | -- | -- | -- | -- | -- | 0.0513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.99 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 3 | 18.01 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 10 | 18.19 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 18 | 18.30 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 24 | 18.35 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 28 | 18.44 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 52 | 18.62 | humidity | 90 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 70 | 18.76 | humidity | 90 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 116 | 18.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 130 | 18.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 136 | 18.99 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 139 | 19.01 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 17 |
| 140 | 19.01 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 19 |
| 159 | 19.05 | humidity | 90 | 4320 | > th | dose dependent | sin | 0 | NA |
| 166 | 19.07 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 17 |
| 183 | 19.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 185 | 19.10 | humidity | 90 | 4320 | > th | dose independent | sin | 1 | NA |
| 216 | 19.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 251 | 19.18 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 22 |
| 324 | 19.24 | humidity | 80 | 4320 | < th | dose independent | rect. | 17 | 22 |
| 325 | 19.24 | humidity | 80 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 327 | 19.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 331 | 19.24 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 349 | 19.26 | humidity | 80 | 4320 | > th | dose independent | sin | 17 | NA |
| 377 | 19.27 | humidity | 80 | 4320 | > th | dose independent | no | NA | NA |
| 398 | 19.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 429 | 19.29 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 430 | 19.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 442 | 19.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 444 | 19.30 | humidity | 80 | 4320 | < th | dose independent | sin | 17 | NA |
| 447 | 19.30 | humidity | 80 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 461 | 19.30 | humidity | 80 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 463 | 19.30 | humidity | 80 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 484 | 19.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 496 | 19.31 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 505 | 19.32 | humidity | 80 | 4320 | < th | dose independent | no | NA | NA |
| 529 | 19.33 | humidity | 90 | 4320 | < th | dose independent | sin | 1 | NA |
| 539 | 19.33 | humidity | 80 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 555 | 19.34 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 556 | 19.34 | humidity | 80 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 582 | 19.34 | humidity | 60 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 591 | 19.35 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 595 | 19.35 | humidity | 80 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 624 | 19.35 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 636 | 19.36 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 641 | 19.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 664 | 19.36 | humidity | 70 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 694 | 19.38 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 721 | 19.38 | humidity | 70 | 4320 | > th | dose dependent | rect. | 2 | 20 |
| 766 | 19.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 791 | 19.39 | humidity | 70 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 808 | 19.40 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 23 | 21 |
| 854 | 19.41 | humidity | 70 | 4320 | > th | dose dependent | no | NA | NA |
| 857 | 19.41 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 864 | 19.41 | humidity | 60 | 4320 | > th | dose dependent | rect. | 24 | 16 |
