BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0521500 Os09g0521500|AK071023
(361 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01910.1 | chr1:313595-315831 REVERSE LENGTH=354 517 e-147
AT5G60730.1 | chr5:24422838-24425352 FORWARD LENGTH=392 119 2e-27
AT3G10350.2 | chr3:3208310-3210678 FORWARD LENGTH=434 118 4e-27
>AT1G01910.1 | chr1:313595-315831 REVERSE LENGTH=354
Length = 353
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 286/345 (82%), Gaps = 1/345 (0%)
Query: 14 TVRNLLEQESLKWVFXXXXXXXXXXXCXXXXXXXXXXXRQSVLVISTDPAHNLSDAFQQR 73
TV+N+L+QESLKWVF C R SVL+ISTDPAHNLSDAFQQR
Sbjct: 9 TVQNILDQESLKWVFVGGKGGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSDAFQQR 68
Query: 74 FTKFPTLVRGFNNLYAMEIDPKVENDDFA-NEGMEGFLSELTNAIPGVDEAMSFAEMLKL 132
FTK PTLV+GF+NL+AME+DP VE DD A +GM+G S+L NAIPG+DEAMSFAEMLKL
Sbjct: 69 FTKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGMDGLFSDLANAIPGIDEAMSFAEMLKL 128
Query: 133 VQTMDYSVVVFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQATRLFGLGDEL 192
VQTMDY+ +VFDTAPTGHTLRLLQFPATLEKGL K+M+LK++FGGL+ Q +R+FG+ DE
Sbjct: 129 VQTMDYATIVFDTAPTGHTLRLLQFPATLEKGLSKLMSLKSRFGGLMTQMSRMFGMEDEF 188
Query: 193 NEDAMLGRLEGMKDVIEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELAKFEIDAH 252
EDA+LGRLEG+KDVIEQVNRQFKDPD+TTFVCVCIPEFLSLYETERLVQELAKFEID H
Sbjct: 189 GEDALLGRLEGLKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELAKFEIDTH 248
Query: 253 NIIINQVLFDEEAVESKLLKARIKMQQKYIDQFHMLYDDFNITKLPLLPEEVCGVQALQN 312
NIIINQVL+D+E VESKLL+AR++MQQKY+DQF+MLYDDFNITKLPLLPEEV GV+AL+
Sbjct: 249 NIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFNITKLPLLPEEVTGVEALKA 308
Query: 313 FSRHFLTPYKAALKRGTVEEVEQRVSLLKSALQEAESELDRLRKG 357
FS FLTPY R VEE+E++V L+ L+ AE EL+R++ G
Sbjct: 309 FSHKFLTPYHPTTSRSNVEELERKVHTLRLQLKTAEEELERVKSG 353
>AT5G60730.1 | chr5:24422838-24425352 FORWARD LENGTH=392
Length = 391
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 37/289 (12%)
Query: 55 VLVISTDPAHNLSDAFQQRFTK-FPTLVRGFNN-LYAMEIDPKVENDDFANE-------- 104
+V+STDPAH+LSD+F Q + V+G ++ L A+EI P++ D+ +
Sbjct: 100 TIVVSTDPAHSLSDSFSQDLSGGVLKPVQGVDSPLLALEITPEIMKDEIKRQTGDKSVKN 159
Query: 105 -----GMEGFLSELTN---------AIPGVDEAMSFAEMLKLVQTMDYSV---VVFDTAP 147
G+ F EL + A PG+DE + +++L+ ++ +YS +VFDTAP
Sbjct: 160 MMDSMGLGMFAGELGDLNLEDMLNAASPGIDEIAAISKVLQFMEAPEYSRFTRIVFDTAP 219
Query: 148 TGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQATRLFGLGDELNEDAMLGRLEGMKDV 207
TGHTLRLL P + + K+ LK K + +FG E+ + + L+ +K+
Sbjct: 220 TGHTLRLLSLPDFYDSSISKITKLKKKITAAASAFKLVFG-KKEIQQKELPNELDQLKER 278
Query: 208 IEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELAKFEIDAHNIIINQVLFDEEAVE 267
+E+V F+D D T FV V IP +++ E+ RL L K + H +I+NQ+L E+ +
Sbjct: 279 MEKVRNVFRDVDTTEFVIVTIPTVMAINESSRLHASLRKENVPVHRLIVNQLLPQSES-D 337
Query: 268 SKLLKARIKMQQKYIDQFHMLYDDFNITKL-----PLLPEEVCGVQALQ 311
K R K Q + + ++ +D ++ L PLL E+ GV AL+
Sbjct: 338 CKFCSIRRKEQTRVLG---LIQNDTELSGLKLIQSPLLDAEIRGVPALK 383
>AT3G10350.2 | chr3:3208310-3210678 FORWARD LENGTH=434
Length = 433
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 44/289 (15%)
Query: 55 VLVISTDPAHNLSDAFQQRFTK-FPTLVRGFNN-LYAMEIDPKVENDDF-------ANEG 105
LV+STDPAH+LSD+F Q T V G L+A+EI+P+ ++F G
Sbjct: 149 TLVVSTDPAHSLSDSFAQDLTGGMLVPVEGPEAPLFALEINPEKAREEFRSASQMNGGTG 208
Query: 106 MEGFLSELTNAI------------------PGVDEAMSFAEMLKLVQTMDYSVVVFDTAP 147
++ F+ + + PG+DEA++ + + YS++VFDTAP
Sbjct: 209 VKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAIS------KEFCYSIIVFDTAP 262
Query: 148 TGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQATRLFGLGDELNEDAMLGRLEGMKDV 207
TGHTLRLL P L+ + K++ L+ K + +FG +E DA +LE +++
Sbjct: 263 TGHTLRLLSLPDFLDASIGKILKLRQKITSATSAIKSVFG-KEEKGPDAA-DKLEKLRER 320
Query: 208 IEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELAKFEIDAHNIIINQVLFDEEAVE 267
+ +V F+D + T FV V IP +++ E+ RL L K + +I+NQ+L + +
Sbjct: 321 MVKVRELFRDTESTEFVIVTIPTVMAVSESSRLSASLKKESVPVKRLIVNQLL-PPSSSD 379
Query: 268 SKLLKARIKMQQKYIDQFHMLYDDFNITKL-----PLLPEEVCGVQALQ 311
K + K Q + +D M+ +D ++ L PL+ E+ GV AL+
Sbjct: 380 CKFCSIKRKDQMRALD---MIREDSELSALTLMEAPLVDMEIRGVPALR 425
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,342,552
Number of extensions: 247135
Number of successful extensions: 764
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,364,969
Effective search space: 2183256909
Effective search space used: 2183256909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)