FiT-DB / Search/ Help/ Sample detail

Os09g0517000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0446) R2 : 0.787
β1 : -5.41 (0.206) R2dD : 0.572 R2D : 0.566
β2 : 0.503 (0.104) R2dC : 0.011 R2C : -0.0174
β3 : -1.13 (0.102) R2dE : 0.0678 R2E : -0.0458
β4 : 3.05 (0.405) R2dD*C : 0.0269 R2D*C : 0.0222
β5 : -1.75 (0.349) R2dD*E : 0.0208 R2D*E : 0.12
γ1 : -1.36 (0.101) R2dN8 : 0.136 R2N8 : -0.0283
σ : 0.814
deviance : 300.45
__
_____
C
peak time of C : 22.3
E
wheather : temperature
threshold : 19.61
memory length : 1440
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.76
open length of G : 0.499

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.45 0.814 13.2 -5.41 0.503 -1.13 3.05 -1.75 -1.36 22.3 19.61 1440 5.76 0.499
316.61 0.829 13.2 -6.02 0.499 -1.13 3.07 -- -1.48 22.4 19.63 1500 6.02 0.106
337.71 0.856 13.2 -5.45 0.481 -1.14 -- -1.91 -1.35 21.9 19.61 1440 5.74 0.517
354.6 0.877 13.2 -6.13 0.491 -1.14 -- -- -1.5 21.9 19.7 1543 6.03 0.0932
351.84 0.874 13.2 -5.52 -- -1.18 -- -1.87 -1.39 -- 19.6 1441 5.75 0.47
407.77 0.947 13.1 -5.8 0.544 -- 3.09 -- -1.15 22.4 -- -- -- --
446.32 0.989 13.1 -5.93 0.531 -- -- -- -1.16 22.1 -- -- -- --
369 0.895 13.2 -6.13 -- -1.15 -- -- -1.5 -- 19.76 1553 6.06 0.0538
1334.17 1.7 13.1 -- 0.535 -0.744 -- -- -0.703 20.9 19.63 1553 6 0.133
463.4 1.01 13.1 -5.92 -- -- -- -- -1.16 -- -- -- -- --
1371.8 1.73 13 -- 0.517 -- -- -- -0.498 21.3 -- -- -- --
1347.7 1.71 13 -- -- -0.741 -- -- -0.673 -- 19.8 1529 6.02 0.0977
1387.35 1.74 13 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.39 wind 1 14400 > th dose independent rect. 11 2
2 269.61 humidity 90 14400 < th dose dependent rect. 4 3
3 269.84 wind 1 14400 < th dose independent rect. 11 2
4 270.38 humidity 90 14400 < th dose dependent rect. 1 6
8 273.56 wind 3 14400 < th dose dependent rect. 22 1
9 273.85 wind 1 14400 < th dose dependent rect. 11 2
10 273.92 wind 1 14400 < th dose independent rect. 22 1
12 274.77 wind 3 14400 > th dose independent rect. 2 1
22 277.12 humidity 90 14400 < th dose dependent rect. 1 2
25 278.49 wind 3 14400 > th dose independent rect. 23 16
27 278.85 wind 1 14400 < th dose independent rect. 9 4
29 279.22 wind 3 14400 > th dose independent rect. 1 14
33 279.59 humidity 70 14400 > th dose dependent rect. 4 2
38 279.71 wind 3 14400 < th dose independent rect. 23 16
41 279.80 wind 3 14400 < th dose independent rect. 1 14
49 280.86 wind 3 14400 < th dose independent rect. 1 2
51 281.03 wind 3 14400 > th dose independent rect. 18 14
57 281.60 wind 3 14400 < th dose independent rect. 20 19
63 282.12 wind 1 14400 > th dose independent rect. 8 5
78 282.97 wind 3 14400 > th dose independent sin 5 NA
86 283.31 wind 1 14400 > th dose independent rect. 22 1
87 283.32 wind 3 14400 < th dose independent sin 5 NA
93 283.79 wind 3 14400 < th dose independent rect. 18 14
100 284.14 wind 3 14400 < th dose dependent rect. 5 8
117 285.02 wind 3 14400 > th dose independent rect. 1 7
130 285.89 wind 3 14400 > th dose independent sin 10 NA
137 286.24 humidity 50 14400 > th dose dependent rect. 2 5
141 286.36 wind 3 14400 < th dose independent rect. 1 7
149 286.53 humidity 50 14400 < th dose dependent rect. 11 1
177 287.66 humidity 60 14400 < th dose dependent rect. 8 1
208 288.99 wind 5 14400 < th dose dependent rect. 1 1
215 289.13 wind 3 14400 > th dose independent rect. 5 2
216 289.14 wind 3 14400 > th dose independent rect. 23 9
240 289.69 wind 3 14400 > th dose dependent rect. 6 1
256 290.17 wind 3 14400 < th dose independent rect. 5 3
281 290.67 wind 3 43200 < th dose dependent rect. 21 5
292 290.88 wind 9 14400 < th dose independent rect. 1 13
294 290.90 humidity 60 14400 < th dose independent rect. 8 1
325 291.49 wind 3 14400 < th dose dependent rect. 20 18
339 291.79 wind 3 14400 < th dose independent rect. 23 9
349 292.00 humidity 50 14400 < th dose independent rect. 11 1
360 292.26 wind 9 14400 < th dose dependent rect. 5 2
363 292.34 wind 9 14400 > th dose independent rect. 20 18
403 293.35 wind 9 14400 < th dose independent rect. 20 18
426 293.88 wind 9 14400 < th dose independent sin 5 NA
467 294.71 wind 9 14400 < th dose independent rect. 2 16
476 294.81 wind 3 14400 < th dose dependent sin 4 NA
489 294.98 wind 1 14400 < th dose independent rect. 22 4
511 295.24 wind 9 14400 > th dose dependent rect. 20 18
622 296.78 wind 5 14400 < th dose dependent rect. 18 14
643 297.23 wind 1 14400 > th dose independent rect. 22 4
653 297.39 humidity 60 14400 > th dose independent rect. 8 1
683 297.96 wind 9 14400 < th dose dependent rect. 22 17
713 298.40 wind 9 14400 > th dose independent rect. 3 15
721 298.50 wind 9 14400 > th dose independent rect. 24 18
772 299.08 wind 1 14400 > th dose dependent rect. 22 17
784 299.24 humidity 50 14400 > th dose independent rect. 11 1
789 299.33 wind 9 14400 > th dose independent rect. 15 23
810 299.63 wind 1 14400 < th dose dependent rect. 8 1
815 299.67 wind 9 14400 > th dose independent sin 5 NA
843 300.00 humidity 80 14400 < th dose independent rect. 21 10
916 300.63 wind 9 14400 < th dose dependent sin 6 NA
947 300.87 humidity 60 14400 > th dose independent rect. 20 13
958 301.00 wind 9 14400 > th dose independent rect. 23 15
966 301.10 wind 9 14400 < th dose independent rect. 15 23
976 301.17 humidity 60 14400 > th dose independent rect. 3 6
983 301.22 wind 1 14400 > th dose dependent rect. 18 14
997 301.32 humidity 60 14400 > th dose independent rect. 6 3