BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0517000 Os09g0517000|AK067677
         (120 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21500.1  | chr1:7530047-7530954 REVERSE LENGTH=127             59   7e-10

>AT1G21500.1 | chr1:7530047-7530954 REVERSE LENGTH=127
          Length = 126

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 84  DPSVSGVQAKVLASKKRKEAMKEFVAKMREKGKPV 118
           DP+V+GVQAKVLASKKRKE MK  +AK+REKGKPV
Sbjct: 81  DPTVTGVQAKVLASKKRKEEMKASIAKLREKGKPV 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.124    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,042,541
Number of extensions: 14610
Number of successful extensions: 49
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 105 (45.1 bits)