Os09g0516900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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Os09g0516900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 calcium/lipid-binding region, CaLB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.38 | 0.207 | 12.1 | -0.347 | 0.202 | -0.842 | 0.298 | 1.89 | 0.118 | 2.98 | 33.68 | 486 | -- | -- |
| 20.43 | 0.21 | 12 | -0.0476 | 0.18 | -0.924 | 0.199 | -- | 0.195 | 0.985 | 22.98 | 421 | -- | -- |
| 19.56 | 0.206 | 12.1 | -0.374 | 0.236 | -0.845 | -- | 2.16 | 0.115 | 2.45 | 44.85 | 407 | -- | -- |
| 20.37 | 0.21 | 12 | -0.054 | 0.192 | -0.901 | -- | -- | 0.193 | 24 | 23.03 | 388 | -- | -- |
| 21.02 | 0.214 | 12.1 | -0.335 | -- | -0.781 | -- | 1.57 | 0.131 | -- | 63.16 | 780 | -- | -- |
| 29.74 | 0.256 | 12 | 0.147 | 0.197 | -- | -0.0736 | -- | 0.325 | 22.3 | -- | -- | -- | -- |
| 29.75 | 0.255 | 12 | 0.15 | 0.197 | -- | -- | -- | 0.325 | 22.5 | -- | -- | -- | -- |
| 21.65 | 0.217 | 12 | -0.0732 | -- | -0.838 | -- | -- | 0.168 | -- | 24.07 | 666 | -- | -- |
| 20.44 | 0.211 | 12 | -- | 0.189 | -0.873 | -- | -- | 0.204 | 23.8 | 23.06 | 384 | -- | -- |
| 32.14 | 0.265 | 12 | 0.153 | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
| 30.35 | 0.258 | 12 | -- | 0.198 | -- | -- | -- | 0.308 | 22.6 | -- | -- | -- | -- |
| 21.78 | 0.217 | 12 | -- | -- | -0.807 | -- | -- | 0.182 | -- | 24.04 | 654 | -- | -- |
| 32.76 | 0.267 | 12 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 4 | 19.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 27 | 19.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 36 | 19.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 60 | 19.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 61 | 19.70 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 71 | 19.73 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 102 | 19.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 119 | 19.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 121 | 19.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 177 | 19.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 265 | 20.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 271 | 20.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 311 | 20.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 350 | 20.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 351 | 20.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 443 | 20.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 571 | 20.45 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 581 | 20.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 713 | 20.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 826 | 20.61 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 960 | 20.69 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 982 | 20.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 983 | 20.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 985 | 20.70 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 1000 | 20.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |