Os09g0515300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0515300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.94 | 0.573 | 7.76 | -1.08 | 2.57 | -1.82 | -0.808 | 0.136 | -0.0663 | 22.7 | 19.84 | 4447 | 6.03 | 1.94 |
| 148.94 | 0.568 | 7.75 | -1.06 | 2.57 | -1.82 | -0.806 | -- | -0.0596 | 22.7 | 20 | 4447 | 6.02 | 1.94 |
| 151.6 | 0.573 | 7.76 | -1.04 | 2.57 | -1.82 | -- | 0.135 | -0.0655 | 22.7 | 20 | 4447 | 6.03 | 1.94 |
| 151.64 | 0.574 | 7.75 | -1.04 | 2.58 | -1.83 | -- | -- | -0.0634 | 22.7 | 20 | 4449 | 6.03 | 1.94 |
| 331.62 | 0.848 | 7.57 | 0.32 | -- | -2.79 | -- | 1.03 | 0.347 | -- | -41.97 | 3288 | 5.98 | 3.13 |
| 224.63 | 0.703 | 7.67 | -0.592 | 2.57 | -- | -1 | -- | 0.331 | 22.5 | -- | -- | -- | -- |
| 228.74 | 0.708 | 7.66 | -0.552 | 2.58 | -- | -- | -- | 0.334 | 22.5 | -- | -- | -- | -- |
| 194.25 | 0.649 | 7.65 | -0.507 | -- | -3.17 | -- | -- | 0.135 | -- | -44.02 | 3486 | 2.72 | 5.55 |
| 178.13 | 0.622 | 7.74 | -- | 2.56 | -1.55 | -- | -- | 0.0761 | 22.7 | 20 | 4444 | 6.05 | 1.95 |
| 636.52 | 1.18 | 7.6 | -0.506 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 236.76 | 0.72 | 7.65 | -- | 2.57 | -- | -- | -- | 0.395 | 22.5 | -- | -- | -- | -- |
| 193.73 | 0.648 | 7.6 | -- | -- | -3.5 | -- | -- | 0.339 | -- | -25.97 | 3524 | 2.38 | 5.79 |
| 643.26 | 1.18 | 7.59 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.09 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 16 | 155.12 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 31 | 163.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 32 | 163.95 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 33 | 163.98 | wind | 3 | 43200 | > th | dose dependent | sin | 7 | NA |
| 35 | 164.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 58 | 164.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 99 | 165.64 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 106 | 165.87 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 107 | 165.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 110 | 166.03 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 111 | 166.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 116 | 166.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 156 | 167.03 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 169 | 167.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 170 | 167.30 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |
| 183 | 167.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 184 | 167.61 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 189 | 167.67 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 191 | 167.68 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 200 | 167.76 | wind | 5 | 43200 | > th | dose independent | sin | 5 | NA |
| 203 | 167.77 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 213 | 167.85 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 215 | 167.88 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 227 | 167.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 237 | 168.04 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 239 | 168.05 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 242 | 168.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 252 | 168.09 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 279 | 168.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 281 | 168.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 284 | 168.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 298 | 168.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 302 | 168.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 325 | 168.36 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 369 | 168.55 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 389 | 168.61 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 411 | 168.71 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 420 | 168.75 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 464 | 168.93 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 578 | 169.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 617 | 169.48 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 659 | 169.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 746 | 169.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 808 | 170.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 835 | 170.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 907 | 170.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |