BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0515300 Os09g0515300|AK102157
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59490.2  | chr3:21984660-21986262 REVERSE LENGTH=294          109   5e-25

>AT3G59490.2 | chr3:21984660-21986262 REVERSE LENGTH=294
          Length = 293

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 82/118 (69%)

Query: 15  MLRVVEAIATRIRWRLRPHSKRRLLNDILFLCSGLRPVVLMDYGGTMPELQDNLCSLLHH 74
           +L+ + +  ++I+WRL+ +SKRRL  D+L LC+G+RPVV++DYGG MPELQ+ L SLL  
Sbjct: 9   LLQFLSSCLSQIKWRLKSNSKRRLEIDVLALCTGMRPVVMIDYGGKMPELQNRLLSLLEL 68

Query: 75  ARQESSMLSPLRLMVIKDMLYLIHAKGLAEHASPSARSQHKLAFVDLEKSCSKVFAFS 132
            R+   +   L++MVI+DM+YLI+ + L +  S S  S+ +L F+DLE+   K+   S
Sbjct: 69  IREGLPVFKDLKVMVIEDMIYLINVRSLPKFVSSSLDSEPELFFIDLEQDPPKMVTQS 126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,485,250
Number of extensions: 89261
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)