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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0514500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0459) R2 : 0.246
β1 : -0.697 (0.169) R2dD : 0.0296 R2D : 0.0253
β2 : 2.38 (0.301) R2dC : 0.784 R2C : -0.74
β3 : 2.1 (0.257) R2dE : 0.841 R2E : -0.7
β4 : -7.09 (1.3) R2dD*C : 0.467 R2D*C : -0.433
β5 : -6.43 (1.15) R2dD*E : 0.489 R2D*E : -0.464
γ1 : 0.493 (0.0983) R2dN8 : 0.0562 R2N8 : 0.0717
σ : 0.864
deviance : 338.09
__
_____
C
peak time of C : 13.2
E
wheather : radiation
threshold : 9.059
memory length : 285
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.8
open length of G : 18.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.09 0.864 3.15 -0.697 2.38 2.1 -7.09 -6.43 0.493 13.2 9.059 285 12.8 18.3
360.03 0.884 3.15 -0.78 2.18 2.01 -0.248 -- 0.516 13.4 9.315 332 12.5 18.5
362.66 0.887 3.19 -0.742 2.32 2.12 -- -0.827 0.565 13.4 8.26 339 11.6 19.1
360.1 0.884 3.15 -0.756 2.18 2.01 -- -- 0.529 13.4 9.3 328 12.5 18.5
371.96 0.898 3.14 -0.633 -- 0.982 -- -1.04 0.617 -- 38.13 1067 12.5 19.6
389.2 0.925 3.13 -0.636 0.486 -- -0.688 -- 0.573 7.65 -- -- -- --
390.53 0.925 3.13 -0.653 0.485 -- -- -- 0.574 7.66 -- -- -- --
375.09 0.902 3.14 -0.633 -- 0.994 -- -- 0.614 -- 37.73 1069 12.4 19.7
367.51 0.893 3.09 -- 2.01 1.96 -- -- 0.686 13.3 13.56 329 11.3 19.8
403.22 0.938 3.14 -0.647 -- -- -- -- 0.581 -- -- -- -- --
401.78 0.938 3.11 -- 0.48 -- -- -- 0.646 7.76 -- -- -- --
383.59 0.912 3.13 -- -- 0.926 -- -- 0.668 -- 30 1077 12.1 19.7
414.25 0.95 3.12 -- -- -- -- -- 0.653 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 341.01 radiation 10.0 270 < th dose dependent rect. 12 19
5 341.84 radiation 10.0 270 < th dose independent rect. 13 18
21 347.50 temperature 20.0 270 > th dose dependent rect. 3 4
31 349.37 temperature 25.0 10 > th dose independent rect. 5 3
37 349.91 radiation 20.0 10 < th dose dependent rect. 6 2
40 350.19 radiation 1.0 270 < th dose dependent rect. 9 7
42 350.22 radiation 20.0 10 < th dose independent rect. 6 2
45 350.28 radiation 1.0 270 < th dose dependent rect. 11 5
46 350.37 radiation 1.0 270 < th dose independent rect. 13 2
47 350.37 radiation 1.0 270 < th dose dependent rect. 13 2
55 351.12 radiation 1.0 270 < th dose independent rect. 9 6
60 351.34 radiation 1.0 270 > th dose independent rect. 7 22
61 351.39 radiation 1.0 270 > th dose independent rect. 7 11
68 351.64 radiation 1.0 270 < th dose independent rect. 11 5
71 351.79 humidity 80.0 90 > th dose independent rect. 6 1
82 351.89 radiation 1.0 90 > th dose independent rect. 5 2
83 351.98 humidity 70.0 270 > th dose independent rect. 12 19
84 352.00 wind 3.0 30 < th dose dependent rect. 6 3
86 352.10 humidity 70.0 90 > th dose dependent rect. 6 1
95 352.36 radiation 20.0 90 < th dose independent rect. 6 1
109 352.49 temperature 30.0 30 < th dose dependent rect. 6 1
127 352.97 atmosphere 1000.0 10 > th dose dependent rect. 6 1
138 353.42 radiation 1.0 30 > th dose dependent rect. 6 1
159 353.77 wind 3.0 30 < th dose independent rect. 6 1
164 353.94 radiation 20.0 90 < th dose dependent rect. 6 1
190 354.26 humidity 80.0 10 > th dose independent rect. 6 1
193 354.35 atmosphere 1000.0 10 > th dose independent rect. 6 1
198 354.39 temperature 10.0 10 > th dose independent rect. 6 1
200 354.39 temperature 30.0 10 < th dose independent rect. 6 1
201 354.39 humidity 50.0 10 > th dose independent rect. 6 1
205 354.39 atmosphere 1015.0 10 < th dose independent rect. 6 1
209 354.39 precipitation 0.1 10 < th dose independent rect. 6 1
210 354.39 temperature 10.0 10 > th dose independent rect. 7 23
211 354.39 precipitation 0.1 10 < th dose dependent rect. 6 1
213 354.44 atmosphere 995.0 10 > th dose independent rect. 7 23
216 354.49 temperature 25.0 30 > th dose independent rect. 2 6
218 354.51 wind 1.0 30 > th dose independent rect. 6 1
220 354.57 humidity 90.0 10 < th dose independent rect. 6 1
223 354.64 wind 9.0 4320 < th dose independent rect. 7 1
226 354.67 radiation 1.0 10 > th dose independent rect. 6 1
267 355.05 temperature 10.0 1440 > th dose independent rect. 7 1
271 355.05 temperature 30.0 1440 < th dose independent rect. 7 1
275 355.05 humidity 50.0 1440 > th dose independent rect. 7 1
280 355.05 atmosphere 995.0 1440 > th dose independent rect. 7 1
281 355.05 atmosphere 1015.0 1440 < th dose independent rect. 7 1
282 355.05 temperature 10.0 1440 > th dose independent rect. 8 23
288 355.15 temperature 25.0 10 > th dose independent rect. 3 8
297 355.28 precipitation 0.1 30 < th dose independent rect. 7 23
298 355.28 precipitation 0.1 30 < th dose dependent rect. 7 23
301 355.33 temperature 20.0 10 > th dose dependent rect. 5 3
320 355.50 temperature 10.0 10 > th dose dependent rect. 6 1
343 355.81 temperature 20.0 270 > th dose independent rect. 4 1
443 357.49 temperature 20.0 270 > th dose independent rect. 3 4
450 357.72 wind 9.0 30 < th dose independent rect. 7 23
462 357.92 radiation 10.0 270 < th dose independent rect. 3 4
467 358.17 atmosphere 1000.0 720 > th dose independent rect. 19 12
478 358.29 atmosphere 1015.0 30 < th dose independent rect. 7 23
506 358.47 humidity 90.0 10 < th dose dependent rect. 6 1
507 358.49 atmosphere 1015.0 30 < th dose dependent rect. 6 1
540 358.86 radiation 1.0 270 < th dose independent rect. 3 14
548 358.96 radiation 40.0 720 < th dose dependent rect. 11 3
615 359.75 temperature 30.0 10 < th dose independent rect. 7 23
632 359.90 radiation 40.0 720 < th dose independent rect. 11 3
668 360.33 radiation 10.0 270 < th dose dependent rect. 3 14
702 360.51 radiation 1.0 720 < th dose independent rect. 9 3
703 360.51 radiation 1.0 720 < th dose dependent rect. 9 3
706 360.54 radiation 1.0 720 < th dose independent rect. 10 1
707 360.54 radiation 1.0 720 < th dose dependent rect. 10 1
709 360.56 precipitation 0.1 720 < th dose independent rect. 19 12
712 360.56 precipitation 0.1 720 < th dose dependent rect. 19 12
726 360.74 temperature 25.0 270 < th dose independent rect. 12 18
737 360.86 radiation 20.0 720 < th dose independent rect. 19 12
764 361.13 radiation 10.0 90 < th dose dependent rect. 5 12
776 361.24 humidity 80.0 90 > th dose independent rect. 5 14
777 361.28 humidity 80.0 10 > th dose independent rect. 5 15
795 361.42 radiation 40.0 720 < th dose dependent rect. 11 13
825 361.70 radiation 1.0 270 < th dose independent rect. 2 22
831 361.77 humidity 80.0 270 > th dose independent rect. 12 3
832 361.77 humidity 50.0 30 > th dose independent rect. 7 23
867 361.98 humidity 50.0 270 > th dose dependent rect. 3 13
874 362.04 temperature 10.0 720 > th dose independent rect. 7 12
875 362.04 temperature 10.0 720 > th dose independent rect. 19 12
876 362.04 temperature 30.0 720 < th dose independent rect. 19 12
877 362.04 humidity 50.0 720 > th dose independent rect. 19 12
879 362.04 atmosphere 1015.0 720 < th dose independent rect. 7 12
892 362.13 radiation 10.0 270 < th dose dependent rect. 1 23
920 362.26 wind 1.0 30 > th dose dependent rect. 6 1
927 362.34 radiation 40.0 720 < th dose dependent rect. 19 12
950 362.48 wind 9.0 720 < th dose independent rect. 19 12
953 362.53 radiation 40.0 720 < th dose independent rect. 19 19
966 362.60 radiation 1.0 10 > th dose independent rect. 8 10
969 362.62 precipitation 0.1 720 < th dose independent rect. 7 12
970 362.62 precipitation 0.1 720 < th dose dependent rect. 7 12