BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514500 Os09g0514500|AB097944
         (454 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05950.1  | chr1:1804573-1807471 REVERSE LENGTH=628             96   3e-20

>AT1G05950.1 | chr1:1804573-1807471 REVERSE LENGTH=628
          Length = 627

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 19/169 (11%)

Query: 18  EDAVGILVDYLVRPAL-RKGSRMTPEN--QADVARQVHMAVILYNYYHRKQFPQLAFADA 74
           EDA+  L++ LV P L  K +   P    +  VA+QVH  V+LYNYYHRK  P L   + 
Sbjct: 20  EDAIRALLESLVDPLLPSKPTDDLPSTSIRESVAKQVHAVVLLYNYYHRKDNPHL---EC 76

Query: 75  MRF--FKCASLTLGDSLLAYSNMVHQHEKSSGS-PGEGVNLSVTDKAVVDACGIAEALDA 131
           + F  F+  +  +  +LL       QH K  G   G+ V L   +K +VDAC ++ +LDA
Sbjct: 77  LSFESFRSLATVMKPALL-------QHLKEDGGVSGQTVLL---EKVIVDACSLSMSLDA 126

Query: 132 NQDSPDMAMWPISKVAVLLLDSTRKRCLLESGSVGKNVRSLLEKEIDSE 180
           + D   +   PI +VAVLL+DS +K C L+  S+ + V SLLEK I+ E
Sbjct: 127 SSDLFILNKCPIRRVAVLLVDSEKKSCYLQHSSITQGVWSLLEKPIEKE 175




 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 13/148 (8%)

Query: 282 LKFASFKSYLKKRDDLHRKQRMIEDETVQFDMDIQSVFAGGEWTPEAMSLLEKYGILVDS 341
           L   + K  L KRD L R+QR IEDE  + D  IQ++   G+W  +  ++LE        
Sbjct: 466 LSETALKVLLCKRDKLTRQQRNIEDEIAKCDKCIQNI--KGDWELQLETVLECCNETYPR 523

Query: 342 LDMVEVNGSSYSGDGYETLTIERKKLTVERLLRNK--CQELDEVCRENNWILPRYKVMPS 399
            ++ E      S D     + +R KL+ E L   K  CQ LD++C  NNW+LP Y+V PS
Sbjct: 524 RNLQE------SLDKSACQSNKRLKLS-ETLPSTKSLCQRLDDICLMNNWVLPNYRVAPS 576

Query: 400 LTDGMYVANVDIACLEFSQMTFGDPKTN 427
             DG Y A V I     +    G+ K++
Sbjct: 577 --DGGYEAEVRITGNHVACTIHGEEKSD 602



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,128,127
Number of extensions: 383284
Number of successful extensions: 1038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,310,137
Effective search space: 2925168224
Effective search space used: 2925168224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)