Os09g0512900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0512900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.26 | 0.135 | 12.4 | -0.214 | 0.0871 | 0.43 | 0.177 | 1.9 | 0.122 | 3.61 | 0.7199 | 1429 | -- | -- |
| 9.7 | 0.145 | 12.4 | -0.0313 | 0.04 | 0.11 | 0.216 | -- | 0.159 | 5.78 | 27.19 | 3275 | -- | -- |
| 8.34 | 0.135 | 12.4 | -0.215 | 0.0838 | 0.437 | -- | 1.9 | 0.121 | 3.41 | 0.6901 | 1436 | -- | -- |
| 9.57 | 0.144 | 12.4 | -0.0105 | 0.081 | 0.151 | -- | -- | 0.167 | 22.9 | 46.69 | 972 | -- | -- |
| 8.67 | 0.137 | 12.4 | -0.205 | -- | 0.433 | -- | 1.89 | 0.124 | -- | 0.71 | 1453 | -- | -- |
| 9.9 | 0.148 | 12.4 | -0.0267 | 0.0664 | -- | 0.175 | -- | 0.146 | 4.77 | -- | -- | -- | -- |
| 9.96 | 0.148 | 12.4 | -0.0277 | 0.0687 | -- | -- | -- | 0.145 | 3.78 | -- | -- | -- | -- |
| 9.46 | 0.143 | 12.4 | -0.0135 | -- | 0.143 | -- | -- | 0.158 | -- | 56.33 | 402 | -- | -- |
| 9.34 | 0.142 | 12.4 | -- | 0.0636 | 0.201 | -- | -- | 0.166 | 15.5 | 58.01 | 410 | -- | -- |
| 10.22 | 0.149 | 12.4 | -0.0249 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 9.98 | 0.148 | 12.4 | -- | 0.0682 | -- | -- | -- | 0.148 | 3.78 | -- | -- | -- | -- |
| 9.47 | 0.143 | 12.4 | -- | -- | 0.148 | -- | -- | 0.16 | -- | 56.24 | 401 | -- | -- |
| 10.24 | 0.149 | 12.4 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.14 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 4 | 8.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 6 | 8.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 11 | 8.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 12 | 8.21 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 15 | 8.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 20 | 8.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 22 | 8.28 | radiation | 1.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 25 | 8.29 | radiation | 1.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 27 | 8.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 29 | 8.30 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 30 | 8.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 72 | 8.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 93 | 8.31 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 98 | 8.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 108 | 8.33 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 150 | 8.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 153 | 8.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 172 | 8.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 175 | 8.42 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 176 | 8.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 209 | 8.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 215 | 8.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 235 | 8.42 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 239 | 8.43 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 240 | 8.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 332 | 8.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 334 | 8.44 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 340 | 8.45 | radiation | 1.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 343 | 8.45 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 346 | 8.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 357 | 8.46 | radiation | 1.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 370 | 8.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 385 | 8.47 | radiation | 40.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 393 | 8.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 414 | 8.47 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 441 | 8.48 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 468 | 8.49 | radiation | 40.0 | 720 | < th | dose independent | rect. | 20 | 17 |
| 555 | 8.51 | radiation | 40.0 | 720 | < th | dose independent | rect. | 20 | 21 |
| 560 | 8.51 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 579 | 8.51 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 580 | 8.51 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 581 | 8.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 583 | 8.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 590 | 8.52 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 626 | 8.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 631 | 8.53 | radiation | 30.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 633 | 8.53 | radiation | 30.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 638 | 8.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 667 | 8.53 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 755 | 8.53 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 21 |
| 769 | 8.54 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 773 | 8.54 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 774 | 8.54 | radiation | 40.0 | 720 | < th | dose independent | rect. | 20 | 19 |
| 779 | 8.54 | radiation | 30.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 783 | 8.54 | radiation | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 786 | 8.54 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 794 | 8.54 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 801 | 8.54 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 6 |