BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0512900 Os09g0512900|AK061814
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11680.1  | chr5:3759463-3760634 FORWARD LENGTH=208            319   7e-88

>AT5G11680.1 | chr5:3759463-3760634 FORWARD LENGTH=208
          Length = 207

 Score =  319 bits (817), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 173/204 (84%), Gaps = 2/204 (0%)

Query: 1   MAENPQLFGNGMLVPFYGEMFVLARDGVEFHVDKIPSAPGGHAKTKGTIYLSNIRMVFVA 60
           MA NPQL  NGM VPF  EMFVL RDGVEF VDKIP   GGH K KG IYLSNIRMVFV+
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query: 61  SKPVGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPENQNRALYSTHTFKILFKE 120
           SKPV NF AFDMPLLY+H EKFNQPIFHCNNI+G VEPVVPEN++RALYSTH+FKILFKE
Sbjct: 61  SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKE 120

Query: 121 GGCGTFVPLFLNLVASVRRYNQFEAQ--SAASMAPRVDPLQAVQTPVDDMMRHAYVDPND 178
           GGCGTFVPLFLNL++SVR+YN+   Q   AA+ AP VDPLQA QTPVD+MMRHAYVDPND
Sbjct: 121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPND 180

Query: 179 PTKIFLQQPAPESQLRRRNYHGRA 202
           PT+I+LQQP+ ESQLRRR YH  A
Sbjct: 181 PTRIYLQQPSGESQLRRRAYHSGA 204



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,724,407
Number of extensions: 195093
Number of successful extensions: 302
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)