Os09g0509300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0509300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.26 | 0.189 | 12.1 | 0.336 | 0.553 | 0.299 | -0.00111 | -0.111 | 0.287 | 17.3 | 21.53 | 3076 | -- | -- |
| 16.28 | 0.188 | 12.1 | 0.363 | 0.55 | 0.31 | -0.00319 | -- | 0.291 | 17.3 | 21.5 | 3138 | -- | -- |
| 16.26 | 0.188 | 12.1 | 0.336 | 0.553 | 0.299 | -- | -0.111 | 0.287 | 17.3 | 21.53 | 3076 | -- | -- |
| 16.28 | 0.188 | 12.1 | 0.364 | 0.552 | 0.308 | -- | -- | 0.293 | 17.3 | 21.53 | 3140 | -- | -- |
| 25.88 | 0.237 | 12.1 | 0.443 | -- | 0.372 | -- | 0.465 | 0.301 | -- | 26.4 | 387 | -- | -- |
| 18.82 | 0.203 | 12.1 | 0.534 | 0.547 | -- | 0.0272 | -- | 0.394 | 17.4 | -- | -- | -- | -- |
| 18.82 | 0.203 | 12.1 | 0.534 | 0.548 | -- | -- | -- | 0.395 | 17.4 | -- | -- | -- | -- |
| 24.29 | 0.23 | 12.1 | 0.414 | -- | 0.394 | -- | -- | 0.281 | -- | 26.3 | 376 | -- | -- |
| 17.27 | 0.194 | 12.1 | -- | 0.551 | 0.508 | -- | -- | 0.233 | 17.3 | 17.19 | 47520 | -- | -- |
| 34.45 | 0.274 | 12.1 | 0.515 | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
| 26.33 | 0.24 | 12.1 | -- | 0.539 | -- | -- | -- | 0.335 | 17.4 | -- | -- | -- | -- |
| 28.64 | 0.249 | 12.1 | -- | -- | 0.437 | -- | -- | 0.235 | -- | 26.4 | 372 | -- | -- |
| 41.45 | 0.301 | 12.1 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 16.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 4 | 16.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 5 | 16.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 6 | 16.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 83 | 16.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 86 | 16.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 98 | 16.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 99 | 16.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 247 | 16.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 335 | 16.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 336 | 16.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 413 | 16.36 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 502 | 16.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 530 | 16.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 646 | 16.46 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 648 | 16.46 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 730 | 16.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 731 | 16.48 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 765 | 16.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 800 | 16.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 823 | 16.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 908 | 16.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |