Os09g0503400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucyl-tRNA synthetase archae/euk cytosolic, class Ia family protein.
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Os09g0503400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucyl-tRNA synthetase archae/euk cytosolic, class Ia family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.44 | 0.35 | 11.1 | 2.15 | 0.417 | -0.757 | 0.256 | 1.95 | 0.447 | 16.1 | 25.38 | 1510 | -- | -- |
| 55.69 | 0.348 | 11.2 | 1.68 | 0.436 | -0.614 | 0.26 | -- | 0.358 | 16 | 26.22 | 5895 | -- | -- |
| 55.61 | 0.347 | 11.1 | 2.15 | 0.418 | -0.757 | -- | 1.93 | 0.444 | 16 | 25.45 | 1510 | -- | -- |
| 55.67 | 0.348 | 11.2 | 1.66 | 0.412 | -0.615 | -- | -- | 0.339 | 15.8 | 26.2 | 5863 | -- | -- |
| 62.2 | 0.367 | 11.1 | 2.04 | -- | -0.84 | -- | 1.36 | 0.503 | -- | 22.61 | 1269 | -- | -- |
| 69.79 | 0.392 | 11.2 | 1.42 | 0.429 | -- | 0.299 | -- | 0.256 | 15.9 | -- | -- | -- | -- |
| 70.03 | 0.392 | 11.2 | 1.43 | 0.429 | -- | -- | -- | 0.258 | 15.8 | -- | -- | -- | -- |
| 63.45 | 0.371 | 11.2 | 1.64 | -- | -0.687 | -- | -- | 0.388 | -- | 22.75 | 1247 | -- | -- |
| 119.77 | 0.51 | 11.2 | -- | 0.372 | -0.325 | -- | -- | 0.0534 | 15.6 | 29.68 | 5869 | -- | -- |
| 80.21 | 0.418 | 11.2 | 1.41 | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
| 123.84 | 0.521 | 11.2 | -- | 0.401 | -- | -- | -- | 0.0986 | 15.8 | -- | -- | -- | -- |
| 126.2 | 0.523 | 11.2 | -- | -- | -0.362 | -- | -- | 0.00252 | -- | 30.25 | 1165 | -- | -- |
| 132.73 | 0.538 | 11.2 | -- | -- | -- | -- | -- | 0.0898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 53.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 117 | 54.32 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 128 | 54.34 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 161 | 54.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 171 | 54.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 209 | 54.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 242 | 54.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 260 | 54.82 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 370 | 55.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 374 | 55.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 405 | 55.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 411 | 55.12 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 487 | 55.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 496 | 55.25 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 505 | 55.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 524 | 55.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 545 | 55.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 557 | 55.36 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 573 | 55.37 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 592 | 55.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 600 | 55.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 629 | 55.44 | radiation | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 729 | 55.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 741 | 55.53 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 751 | 55.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 786 | 55.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 819 | 55.62 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 890 | 55.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 918 | 55.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 924 | 55.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 983 | 55.81 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |