BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0503400 Os09g0503400|AK099796
(1095 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09620.1 | chr1:3113077-3116455 REVERSE LENGTH=1092 1499 0.0
>AT1G09620.1 | chr1:3113077-3116455 REVERSE LENGTH=1092
Length = 1091
Score = 1499 bits (3880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/1081 (67%), Positives = 854/1081 (79%), Gaps = 5/1081 (0%)
Query: 9 RSFARRDILLKIQSDAQKWWEESKVFEAXXXXXXXXXXXXXXXXXXYPYMNGLLHLGHAF 68
+S+ARRD LL+I++ +KWWE+ VF A +PYMNG LH+GHAF
Sbjct: 6 KSYARRDRLLEIEATVRKWWEDEDVFRAESCENLPKPGEKFFSTFPFPYMNGYLHIGHAF 65
Query: 69 SLSKLEFGAAYQRLRGSNVLLPFAFHCTGMPIKASADKLSREAQQYGYPPAFPXXXXXXX 128
SLSK++F +AY RLRG+NVLLPF FHCTGMPIKASADKL RE +Q+G PP F
Sbjct: 66 SLSKVDFASAYHRLRGANVLLPFGFHCTGMPIKASADKLRREIEQFGNPPVF-TAEDTTK 124
Query: 129 XXXXXXXXXXNAASVVPDXXXXXXXXXXXXVGMQKFQWEIMRGFGLSDEEIAKFQDPYHW 188
A +P G Q +QWEIMR FGL+D EIA F++P W
Sbjct: 125 VPEVQEESSDTIALPIPGQFKGKKSKVAAKAGGQVYQWEIMRSFGLTDSEIANFREPSEW 184
Query: 189 LTYFPPLAKEDLKAFGLGCDWRRSFITTDMNPFYDAFVRWQMRKLKKMGKVVKDMRYTIY 248
L YFPPLA EDL+A+GLGCDWRRSF+TTD+NPF+DAFVRWQMRKLK MGK+VKD RYTI+
Sbjct: 185 LYYFPPLAVEDLRAYGLGCDWRRSFVTTDVNPFFDAFVRWQMRKLKSMGKIVKDRRYTIF 244
Query: 249 SPLDGQPCADHDRASGEGVQPQEYVLIKMEVVPPFPPKLKTMEGRNVYLAAATLRPETMY 308
SPLDGQPCADHDRA+GEGVQPQEY LIKMEVV PFP KL +EG+ V+LAAATLRPETMY
Sbjct: 245 SPLDGQPCADHDRATGEGVQPQEYTLIKMEVVKPFPLKLGPLEGKRVFLAAATLRPETMY 304
Query: 309 GQTNCWVLPDGKYGAFEINDTDVFIVTSRAALNLAYQNLSRVPEKPTCLMELSGCDLIGL 368
GQTN WVLPDGKYGA+EI++T+VFI+T RAALNLAYQN S+ P++P+CL+EL+G DLIGL
Sbjct: 305 GQTNAWVLPDGKYGAYEISETEVFILTERAALNLAYQNFSKNPQEPSCLVELTGYDLIGL 364
Query: 369 PLKSPLAFNEIIYALPMLTILTDKGTGIVTSVPSDSPDDFMALQDLVAKPALRQKYGVKD 428
PL+SPL+ NEIIYALPMLTILT+KGTGIVTSVPSD+PDD+MALQDL+ KPAL+ KYGVK
Sbjct: 365 PLRSPLSVNEIIYALPMLTILTNKGTGIVTSVPSDAPDDYMALQDLIKKPALQDKYGVKT 424
Query: 429 EWVLPFKVVPIINIPEFGDKSAEKVCLDLKIKSQNDKEKLAEAKRMTYLKGFTDGTMIVG 488
EW LP +++PIINIPEFGDK+AEKVCLDLKIKSQNDKEKLAEAKR+TYLKGFT+GTM++G
Sbjct: 425 EW-LPTEIIPIINIPEFGDKAAEKVCLDLKIKSQNDKEKLAEAKRLTYLKGFTEGTMLIG 483
Query: 489 EFNGRKVQEAKPLIKNKLLEEGTAVLYSEPEKKVMSRSGDECVVALTDQWYITYGETEWK 548
EF GRKVQE KP+IK KL+E G A++YSEPEK VMSRSGDECVVALTDQWYITYGE+EW+
Sbjct: 484 EFFGRKVQEIKPIIKTKLIETGEAIIYSEPEKPVMSRSGDECVVALTDQWYITYGESEWR 543
Query: 549 QKAVQCLEKMNTFSAETRNGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLVESLSDSTLY 608
+ A +CL KMN +S ETR+GFEHTL WLNQWACSRSFGLGTRIPWDEQFLVESLSDS+LY
Sbjct: 544 KIAEECLSKMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQFLVESLSDSSLY 603
Query: 609 MAYYTIAHLLQNGNMYGKEISSIRPEQMTDEVWDYVFCDGPAP-NSDIPPALLSKMKLEF 667
MAYYT+AH+ +G+MY S IRP+QM DEVW+Y+FCDGP P +SDIP A+LS+MK EF
Sbjct: 604 MAYYTVAHIFHDGDMYKGSKSLIRPQQMNDEVWEYLFCDGPYPKSSDIPSAVLSEMKQEF 663
Query: 668 EYWYPFDIRVSGKDLIQNHLTFSIYNHTALLPEHHWPRGFRCNGHLMLNSEKMSKSTGNF 727
+YWYP D+RVSGKDLIQNHLTF IYNHTAL+ +WPRG RCNGH+MLNSEKMSKSTGNF
Sbjct: 664 DYWYPLDLRVSGKDLIQNHLTFFIYNHTALMANRNWPRGIRCNGHIMLNSEKMSKSTGNF 723
Query: 728 RTLRQAIEEFSSDATRFXXXXXXXXXXXXNFVFETANAAILRLTKEIAWMEEVIAAESSL 787
RTLRQ+IEEFS+ TRF NF FETANAAILRLTKE+ WMEEV+ ESSL
Sbjct: 724 RTLRQSIEEFSATGTRFCLADAGDGVDDANFAFETANAAILRLTKELTWMEEVLDVESSL 783
Query: 788 RAGPPSTYADHVFANEINIAVIETEKSYNAFMFRDALKLGFYDLQLARDEYRLSCGAAGM 847
R GPPSTYAD VF N++NIA+ TE++Y +FR+ALK GFYDLQ ARDEYRLSCG GM
Sbjct: 784 RTGPPSTYADKVFENDMNIALRLTERAYKDCLFREALKNGFYDLQAARDEYRLSCGTGGM 843
Query: 848 NRELLWRFMEVQTRLITPICPHYAEHVWRNILRKEGFAIKAGWPIAGTPDPTLRIANKYL 907
+ +LL +FM+VQTRLI PICPH+A++VWR +L KEG + AGWP + PD L+ ANKYL
Sbjct: 844 HHDLLLKFMDVQTRLIVPICPHFADYVWRKVLNKEGCVLTAGWPPSNEPDLVLKSANKYL 903
Query: 908 QDSIVKFRKLLQKQESGSKK-PKKGTAPPPSEQNKLTVGLVYVNENYYGWKEQCLRVLQS 966
QDSIV RKLLQKQ SGSKK KKG + KL GLVYVNE + GW+ CLR+LQS
Sbjct: 904 QDSIVLMRKLLQKQLSGSKKGAKKGAQVTAVPEGKLK-GLVYVNEQFDGWRAHCLRILQS 962
Query: 967 KFDSQARLFAPDEEINEALKNCSIGQETNFKQVQKLCMPFIKSKKDEARSVGPHALNLKL 1026
+FD Q F PD E+ L + + N K +QK+CMPF+K KKDEA S+G ALNL+L
Sbjct: 963 RFDQQTCSFPPDTEMLAELSATLLQEGKNLKAIQKVCMPFLKFKKDEAISIGTQALNLRL 1022
Query: 1027 PFGEMSVLEENLELIKRQVGLEHAEVLSASDEAARAKAGVHASMLDKTPPSPGEPVAIFM 1086
PFGE+ VL+ N +LI+RQ+GLE E+ SASD + AG HAS+L + PPSPG P AIF+
Sbjct: 1023 PFGEIEVLQSNKDLIRRQLGLEEVEIYSASDPDDVSIAGPHASLLTQNPPSPGSPTAIFV 1082
Query: 1087 S 1087
+
Sbjct: 1083 T 1083
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,720,020
Number of extensions: 1012700
Number of successful extensions: 2307
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2310
Number of HSP's successfully gapped: 1
Length of query: 1095
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 986
Effective length of database: 8,118,225
Effective search space: 8004569850
Effective search space used: 8004569850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)