Os09g0488600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0488600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase PKN/PRK1, effector domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.88	(0.0565)	R²	:	0.356
β₁	:	-2.14	(0.22)	R²_dD	:	0.164	R²_D	:	0.242
β₂	:	0.693	(0.148)	R²_dC	:	0.0295	R²_C	:	0.0306
β₃	:	0.779	(0.256)	R²_dE	:	0.015	R²_E	:	0.0297
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-3.58	(0.72)	R²_dD*E	:	0.0364	R²_D*E	:	0.0895
γ₁	:	0.41	(0.123)	R²_dN8	:	0.0206	R²_N8	:	0.0254
σ	:	1.04
deviance	:	496.71
__

_____

C
peak time of C	:	6.85
E
wheather	:	temperature
threshold	:	20.2
memory length	:	220
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	1.54
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
484.91	1.03	4.87	-2.06	0.637	0.805	2.45	-4.39	0.436	6.66	20.3	242	1.58	--
515.04	1.06	4.9	-2.47	0.59	1.24	1.12	--	0.392	6.77	19.33	289	1.96	--
496.71	1.04	4.88	-2.14	0.693	0.779	--	-3.58	0.41	6.85	20.2	220	1.54	--
515.36	1.06	4.92	-2.46	0.638	1.22	--	--	0.316	6.52	19.38	287	1.11	--
517.3	1.06	4.9	-2.14	--	1.08	--	-3.33	0.417	--	20.3	232	1.28	--
532.64	1.08	4.95	-2.68	0.772	--	0.503	--	0.201	6.56	--	--	--	--
533.22	1.08	4.95	-2.68	0.776	--	--	--	0.199	6.41	--	--	--	--
523.63	1.07	4.94	-2.59	--	0.833	--	--	0.35	--	25.2	287	1.63	--
652	1.19	4.85	--	0.488	2.74	--	--	0.671	7.23	18.45	348	1.07	--
564.47	1.11	4.96	-2.66	--	--	--	--	0.216	--	--	--	--	--
721.93	1.26	4.88	--	0.741	--	--	--	0.497	6.61	--	--	--	--
665.3	1.2	4.86	--	--	3.25	--	--	0.66	--	18.5	340	1.85	--
750.53	1.28	4.9	--	--	--	--	--	0.51	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	478.09	temperature	20.0	270	< th	dose independent	rect.	23	10
2	478.52	temperature	20.0	270	> th	dose independent	rect.	22	12
20	486.73	humidity	90.0	14400	> th	dose independent	rect.	13	1
22	486.84	humidity	90.0	14400	< th	dose independent	rect.	13	1
24	487.27	temperature	20.0	270	< th	dose independent	sin	8	NA
25	487.28	temperature	20.0	270	> th	dose independent	sin	7	NA
37	488.44	precipitation	0.1	43200	< th	dose independent	rect.	12	1
38	488.44	precipitation	0.1	43200	< th	dose dependent	rect.	12	1
43	488.91	temperature	20.0	270	< th	dose independent	rect.	22	20
48	489.44	temperature	20.0	270	< th	dose dependent	rect.	24	8
51	489.70	humidity	90.0	14400	< th	dose independent	rect.	11	4
59	490.30	humidity	90.0	14400	> th	dose dependent	rect.	14	2
81	490.97	humidity	90.0	14400	> th	dose dependent	rect.	17	1
87	491.18	precipitation	0.1	43200	< th	dose independent	rect.	10	3
88	491.18	precipitation	0.1	43200	< th	dose dependent	rect.	10	3
114	492.07	precipitation	0.1	43200	> th	dose independent	rect.	12	1
115	492.07	precipitation	0.1	43200	> th	dose dependent	rect.	12	1
131	492.49	precipitation	0.1	43200	> th	dose independent	rect.	10	3
133	492.49	precipitation	0.1	43200	> th	dose dependent	rect.	10	3
148	492.73	humidity	90.0	14400	> th	dose dependent	rect.	6	12
185	493.68	temperature	20.0	30	> th	dose dependent	rect.	24	12
231	494.77	precipitation	0.1	43200	> th	dose dependent	rect.	5	14
235	494.82	precipitation	0.1	43200	> th	dose dependent	rect.	3	16
250	494.99	precipitation	0.1	43200	> th	dose dependent	sin	1	NA
255	495.12	precipitation	0.1	43200	> th	dose independent	rect.	5	13
256	495.12	precipitation	0.1	43200	< th	dose independent	rect.	5	13
258	495.12	precipitation	0.1	43200	< th	dose dependent	rect.	5	13
265	495.15	precipitation	0.1	43200	< th	dose independent	rect.	3	16
266	495.15	precipitation	0.1	43200	< th	dose dependent	rect.	3	16
269	495.19	precipitation	0.1	43200	> th	dose independent	rect.	3	16
285	495.30	precipitation	0.1	14400	> th	dose dependent	rect.	13	3
288	495.33	humidity	90.0	14400	< th	dose independent	rect.	2	16
293	495.36	precipitation	0.1	43200	> th	dose dependent	rect.	23	20
300	495.44	radiation	10.0	14400	> th	dose independent	rect.	10	1
309	495.53	precipitation	0.1	14400	> th	dose independent	rect.	13	3
323	495.66	precipitation	0.1	43200	> th	dose dependent	rect.	7	7
331	495.76	wind	9.0	43200	> th	dose independent	rect.	18	2
343	495.81	precipitation	0.1	43200	< th	dose independent	sin	1	NA
344	495.81	precipitation	0.1	43200	< th	dose dependent	sin	1	NA
355	495.86	precipitation	0.1	43200	> th	dose independent	rect.	7	6
358	495.88	precipitation	0.1	43200	> th	dose independent	sin	1	NA
371	495.96	precipitation	0.1	43200	< th	dose independent	rect.	6	10
373	495.96	precipitation	0.1	43200	< th	dose dependent	rect.	6	10
374	495.98	precipitation	0.1	43200	> th	dose independent	rect.	6	10
390	496.08	precipitation	0.1	43200	< th	dose independent	rect.	23	20
393	496.08	precipitation	0.1	43200	< th	dose dependent	rect.	23	20
397	496.10	precipitation	0.1	43200	> th	dose independent	rect.	23	20
418	496.20	precipitation	0.1	43200	> th	dose dependent	rect.	18	18
439	496.30	precipitation	0.1	14400	< th	dose independent	rect.	13	3
440	496.30	precipitation	0.1	14400	< th	dose dependent	rect.	13	3
444	496.32	humidity	90.0	14400	> th	dose dependent	sin	23	NA
447	496.33	temperature	20.0	270	> th	dose independent	rect.	15	21
454	496.38	precipitation	0.1	43200	> th	dose dependent	rect.	20	16
460	496.40	precipitation	0.1	43200	> th	dose independent	rect.	17	19
472	496.45	precipitation	0.1	43200	< th	dose independent	rect.	20	17
473	496.45	precipitation	0.1	43200	< th	dose dependent	rect.	20	17
479	496.47	precipitation	0.1	43200	< th	dose independent	rect.	17	19
480	496.47	precipitation	0.1	43200	< th	dose dependent	rect.	17	19
481	496.48	temperature	20.0	14400	< th	dose independent	rect.	8	1
488	496.50	temperature	20.0	14400	> th	dose independent	rect.	8	1
490	496.50	precipitation	0.1	43200	> th	dose dependent	rect.	18	14
528	496.59	precipitation	0.1	43200	> th	dose independent	rect.	16	16
532	496.60	precipitation	0.1	43200	> th	dose independent	rect.	20	17
541	496.63	humidity	90.0	14400	> th	dose independent	rect.	4	14
552	496.67	wind	9.0	43200	< th	dose independent	rect.	18	2
557	496.70	precipitation	0.1	43200	< th	dose independent	rect.	16	16
561	496.70	precipitation	0.1	43200	< th	dose dependent	rect.	16	16
567	496.71	precipitation	0.1	43200	> th	dose dependent	rect.	3	21
573	496.73	temperature	20.0	14400	> th	dose independent	rect.	8	11
599	496.83	humidity	80.0	1440	< th	dose independent	rect.	18	16
645	496.95	precipitation	0.1	43200	> th	dose dependent	sin	10	NA
654	496.98	humidity	80.0	1440	< th	dose independent	rect.	18	19
655	496.98	precipitation	0.1	43200	> th	dose independent	rect.	3	21
657	496.98	precipitation	0.1	43200	< th	dose independent	rect.	3	21
660	496.98	precipitation	0.1	43200	< th	dose dependent	rect.	3	21
734	497.15	precipitation	0.1	43200	> th	dose dependent	rect.	19	23
744	497.18	precipitation	0.1	43200	> th	dose dependent	rect.	15	17
767	497.23	temperature	20.0	14400	> th	dose independent	rect.	10	9
781	497.28	temperature	20.0	14400	< th	dose independent	rect.	7	10
783	497.28	humidity	90.0	14400	> th	dose independent	rect.	6	12
798	497.31	precipitation	0.1	43200	> th	dose dependent	rect.	10	22
799	497.32	precipitation	0.1	43200	> th	dose dependent	rect.	20	12
829	497.39	wind	1.0	43200	< th	dose dependent	rect.	1	12
867	497.50	humidity	90.0	14400	> th	dose independent	sin	1	NA
868	497.50	precipitation	0.1	43200	> th	dose independent	rect.	19	23
874	497.52	precipitation	0.1	43200	< th	dose independent	rect.	19	23
876	497.52	precipitation	0.1	43200	< th	dose dependent	rect.	19	23
886	497.54	precipitation	0.1	43200	> th	dose independent	sin	10	NA
893	497.56	humidity	90.0	14400	< th	dose independent	sin	2	NA
918	497.61	precipitation	0.1	43200	< th	dose independent	sin	10	NA
922	497.61	precipitation	0.1	43200	< th	dose dependent	sin	10	NA
929	497.62	precipitation	0.1	43200	> th	dose dependent	no	NA	NA
952	497.67	precipitation	0.1	43200	> th	dose dependent	rect.	21	10
993	497.79	precipitation	0.1	43200	> th	dose independent	rect.	20	11