BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0488600 Os09g0488600|Os09g0488600
         (456 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12930.1  | chr5:4083155-4085222 REVERSE LENGTH=440            152   4e-37

>AT5G12930.1 | chr5:4083155-4085222 REVERSE LENGTH=440
          Length = 439

 Score =  152 bits (383), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 22/298 (7%)

Query: 50  AWVSLQGRLVGXXXXXXXXXXXPGLPPDEAVAWELFSPXXXXXXXXXXXXXXXXXXXXXX 109
           A++SLQG LV             GL  +E++AWELF+P                      
Sbjct: 51  AYISLQGLLVNSDEASSARSIGGGLSREESLAWELFTPYQRFLLVAVIGVAAAQSKKNGV 110

Query: 110 VEQLQRSIHIRDEVLQSMQQKLDDLFDEMNSLQQQYVKCNTFISSEQGKSEL---VGSKK 166
           + QLQ+S+ +RD++L SMQQKLDDL  E+N  + Q    +     +  +S L    GS++
Sbjct: 111 IRQLQKSVDLRDQLLSSMQQKLDDLCHELNLAKDQSGAVSKVSDHDYPQSALKEKFGSER 170

Query: 167 VGDYDGARCCACAKPEIAATPHKTKDICGMDDAKSDVVDRSSVSHMDHEERRMSDLSDFC 226
           +   D   C  C +       H        D A +++V  +     + EERRMS +SD+C
Sbjct: 171 INFVDCG-CWLCDQ-------HHHSSPAVQDKAPTNLVLDA-----EPEERRMSYMSDWC 217

Query: 227 WSVVSSVDNHVNGDNQLSSLAAEQELYNLQKECEEKDAIIKELXXXXXXXXXXXXKRIAE 286
            SV S+ + H +      SL+ +Q++ +L+KEC+EKDA IK+L            KR  E
Sbjct: 218 SSVTSAAETHFD------SLSLDQDMLSLRKECQEKDATIKDLTSFLQLTNKAGSKRETE 271

Query: 287 LQEILKRKNMVISKLKKDMSALKQMVVELTRAKRTSSVNLSTSCSELPVMSSNVLYDM 344
           L+EI+ RK  +I KLK+D+  L+  V +LTR +R+S     ++  E P+   N+LYDM
Sbjct: 272 LEEIISRKKTIIKKLKRDVLVLEDKVTQLTRLRRSSYSPAVSNTHEFPMRMDNLLYDM 329



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,728,130
Number of extensions: 285128
Number of successful extensions: 730
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 354
Effective length of database: 8,310,137
Effective search space: 2941788498
Effective search space used: 2941788498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)