Os09g0488000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GCN5-related N-acetyltransferase domain containing protein.
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Os09g0488000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GCN5-related N-acetyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.63 | 0.674 | 5.5 | -0.36 | 0.299 | 1.29 | -0.595 | -2.2 | -0.604 | 7.09 | 25.46 | 103 | -- | -- |
| 206.94 | 0.67 | 5.46 | -0.102 | 0.306 | 1.07 | -0.358 | -- | -0.523 | 8.11 | 25.6 | 125 | -- | -- |
| 204.93 | 0.667 | 5.48 | -0.339 | 0.403 | 1.31 | -- | -2.26 | -0.552 | 8.4 | 26.3 | 234 | -- | -- |
| 206.16 | 0.669 | 5.46 | -0.111 | 0.4 | 1.08 | -- | -- | -0.511 | 8.63 | 26.02 | 246 | -- | -- |
| 211.54 | 0.681 | 5.49 | -0.309 | -- | 1.21 | -- | -2.38 | -0.556 | -- | 26.3 | 234 | -- | -- |
| 225.11 | 0.703 | 5.46 | 0.0407 | 0.41 | -- | 0.334 | -- | -0.475 | 13.4 | -- | -- | -- | -- |
| 225.51 | 0.703 | 5.45 | 0.0516 | 0.409 | -- | -- | -- | -0.474 | 13.1 | -- | -- | -- | -- |
| 211.74 | 0.681 | 5.47 | -0.0976 | -- | 1.02 | -- | -- | -0.525 | -- | 25.7 | 122 | -- | -- |
| 206.47 | 0.669 | 5.45 | -- | 0.394 | 1.05 | -- | -- | -0.498 | 8.79 | 26.1 | 248 | -- | -- |
| 235.9 | 0.718 | 5.46 | 0.036 | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
| 225.58 | 0.703 | 5.45 | -- | 0.408 | -- | -- | -- | -0.479 | 13.1 | -- | -- | -- | -- |
| 210.98 | 0.677 | 5.47 | -- | -- | 1.04 | -- | -- | -0.546 | -- | 24.8 | 21 | -- | -- |
| 235.94 | 0.717 | 5.46 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 2 | 192.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 3 | 193.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 193.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 58 | 198.30 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 73 | 198.95 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 12 |
| 85 | 199.49 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 88 | 199.52 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 108 | 199.99 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 129 | 200.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 135 | 200.79 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 174 | 201.54 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 182 | 201.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 184 | 201.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 232 | 202.56 | radiation | 1 | 90 | > th | dose independent | rect. | 12 | 23 |
| 263 | 202.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 269 | 202.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 285 | 203.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 288 | 203.08 | humidity | 70 | 90 | > th | dose independent | rect. | 18 | 11 |
| 293 | 203.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 327 | 203.35 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 348 | 203.48 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 418 | 203.93 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 11 |
| 489 | 204.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 505 | 204.44 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 15 |
| 527 | 204.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 644 | 205.08 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 648 | 205.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 661 | 205.15 | radiation | 20 | 270 | < th | dose dependent | rect. | 16 | 12 |
| 662 | 205.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 8 |
| 710 | 205.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 739 | 205.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 775 | 205.61 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 11 |
| 807 | 205.73 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 15 |
| 811 | 205.74 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 815 | 205.76 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 14 |
| 828 | 205.81 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 12 |
| 869 | 205.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 875 | 205.93 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 21 |
| 878 | 205.93 | radiation | 1 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 884 | 205.94 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 16 |
| 900 | 205.97 | wind | 9 | 720 | < th | dose independent | rect. | 15 | 14 |
| 907 | 205.98 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 944 | 206.11 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 16 |