Os09g0479900 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0479900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.31	(0.0445)	R²	:	0.693
β₁	:	0.198	(0.163)	R²_dD	:	0.000385	R²_D	:	-0.00245
β₂	:	2.77	(0.108)	R²_dC	:	0.465	R²_C	:	0.56
β₃	:	1.88	(0.154)	R²_dE	:	0.103	R²_E	:	0.192
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	3.81	(0.658)	R²_dD*E	:	0.0234	R²_D*E	:	0.0318
γ₁	:	-0.135	(0.0949)	R²_dN8	:	0.00141	R²_N8	:	0.000666
σ	:	0.83
deviance	:	317.71
__

_____

C
peak time of C	:	23.2
E
wheather	:	radiation
threshold	:	0.6544
memory length	:	127
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	20.4
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
313.46	0.832	5.32	0.173	2.78	1.81	1.04	3.62	-0.122	23.4	0.6063	121	20.1	--
330.46	0.847	5.32	0.117	2.8	1.72	1.47	--	-0.113	23.4	1.318	107	20.6	--
317.71	0.83	5.31	0.198	2.77	1.88	--	3.81	-0.135	23.2	0.6544	127	20.4	--
339.2	0.858	5.32	0.0604	2.75	1.87	--	--	-0.11	23.1	1.39	113	21	--
385.6	0.915	5.24	0.154	--	2.91	--	1.8	-0.142	--	16.14	6	4.98	--
383	0.917	5.32	0.108	3.17	--	2.06	--	-0.194	0.464	--	--	--	--
400.95	0.938	5.32	0.0305	3.17	--	--	--	-0.203	0.381	--	--	--	--
395.89	0.927	5.27	0.0428	--	3.06	--	--	-0.185	--	42.96	9	5.42	--
339.27	0.858	5.32	--	2.74	1.87	--	--	-0.111	23.1	1.508	110	21	--
1030.52	1.5	5.26	0.137	--	--	--	--	-0.152	--	--	--	--	--
400.97	0.937	5.32	--	3.17	--	--	--	-0.206	0.381	--	--	--	--
395.84	0.927	5.27	--	--	3.05	--	--	-0.179	--	42.78	13	5.45	--
1031.02	1.5	5.27	--	--	--	--	--	-0.167	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	308.23	wind	7.0	30	< th	dose independent	rect.	6	21
3	310.14	wind	9.0	90	< th	dose dependent	rect.	6	20
4	310.22	wind	7.0	270	< th	dose independent	rect.	4	21
12	312.67	radiation	10.0	10	< th	dose independent	rect.	3	3
19	313.29	precipitation	0.1	30	< th	dose independent	rect.	6	21
20	313.29	precipitation	0.1	30	< th	dose dependent	rect.	6	21
22	313.73	temperature	15.0	10	> th	dose independent	rect.	6	21
23	313.76	radiation	40.0	10	< th	dose dependent	rect.	3	3
27	313.89	wind	9.0	10	< th	dose independent	rect.	3	3
28	313.89	temperature	10.0	10	> th	dose independent	rect.	3	3
30	313.89	temperature	30.0	10	< th	dose independent	rect.	3	3
31	313.89	humidity	50.0	10	> th	dose independent	rect.	3	3
34	313.89	atmosphere	995.0	10	> th	dose independent	rect.	3	3
35	313.89	atmosphere	1010.0	10	< th	dose independent	rect.	3	3
62	314.29	wind	9.0	270	< th	dose dependent	rect.	4	21
64	314.49	precipitation	0.1	270	< th	dose independent	rect.	4	21
66	314.49	precipitation	0.1	270	< th	dose dependent	rect.	4	21
67	314.50	radiation	1.0	90	> th	dose independent	sin	3	NA
69	314.56	wind	7.0	270	< th	dose independent	rect.	5	10
74	314.76	radiation	1.0	90	< th	dose independent	rect.	3	7
79	314.87	precipitation	0.1	30	< th	dose independent	rect.	3	3
81	314.87	precipitation	0.1	30	< th	dose dependent	rect.	3	3
87	315.16	radiation	1.0	90	< th	dose dependent	rect.	3	7
111	315.98	wind	9.0	270	< th	dose dependent	rect.	5	11
112	315.99	humidity	50.0	30	> th	dose dependent	rect.	3	3
114	316.14	radiation	1.0	90	< th	dose dependent	rect.	3	14
117	316.24	radiation	1.0	90	< th	dose independent	rect.	3	12
118	316.25	wind	9.0	30	< th	dose dependent	rect.	3	3
123	316.56	atmosphere	995.0	10	> th	dose dependent	rect.	3	3
124	316.59	radiation	1.0	90	< th	dose dependent	rect.	3	12
127	316.68	radiation	30.0	10	< th	dose dependent	rect.	16	14
139	317.03	temperature	10.0	270	> th	dose independent	rect.	1	3
141	317.03	temperature	30.0	270	< th	dose independent	rect.	1	3
142	317.03	humidity	50.0	270	> th	dose independent	rect.	1	3
145	317.03	atmosphere	995.0	270	> th	dose independent	rect.	1	3
146	317.03	atmosphere	1010.0	270	< th	dose independent	rect.	1	3
153	317.03	temperature	10.0	270	> th	dose independent	rect.	4	21
161	317.05	wind	9.0	270	< th	dose independent	rect.	1	3
167	317.27	radiation	1.0	90	< th	dose dependent	sin	2	NA
173	317.60	temperature	10.0	30	> th	dose dependent	rect.	3	3
214	317.99	precipitation	0.1	270	< th	dose independent	rect.	1	3
215	317.99	precipitation	0.1	270	< th	dose dependent	rect.	1	3
340	319.68	wind	9.0	1440	< th	dose independent	rect.	3	4
341	319.68	temperature	10.0	1440	> th	dose independent	rect.	3	4
344	319.68	temperature	30.0	1440	< th	dose independent	rect.	3	4
348	319.68	humidity	50.0	1440	> th	dose independent	rect.	3	4
353	319.68	atmosphere	995.0	1440	> th	dose independent	rect.	3	4
354	319.68	radiation	40.0	1440	< th	dose independent	rect.	3	4
358	319.68	temperature	10.0	1440	> th	dose independent	rect.	7	20
401	320.34	atmosphere	995.0	10	> th	dose independent	rect.	6	21
421	320.69	radiation	40.0	270	< th	dose independent	rect.	15	14
424	320.74	precipitation	0.1	270	< th	dose independent	rect.	5	10
425	320.74	precipitation	0.1	270	< th	dose dependent	rect.	5	10
426	320.75	temperature	10.0	270	> th	dose independent	rect.	5	10
427	320.75	atmosphere	1015.0	270	< th	dose independent	rect.	5	10
428	320.75	temperature	10.0	270	> th	dose independent	rect.	15	14
432	320.81	temperature	30.0	90	< th	dose dependent	rect.	3	2
448	320.86	atmosphere	1015.0	1440	< th	dose independent	rect.	4	3
460	320.91	wind	1.0	270	> th	dose independent	rect.	1	3
492	321.18	precipitation	0.1	10	< th	dose independent	rect.	6	10
494	321.18	precipitation	0.1	10	< th	dose dependent	rect.	6	10
505	321.31	temperature	10.0	10	> th	dose independent	rect.	6	10
507	321.31	atmosphere	1015.0	10	< th	dose independent	rect.	6	10
508	321.31	temperature	10.0	10	> th	dose independent	rect.	16	14
509	321.31	radiation	40.0	10	< th	dose independent	rect.	16	14
533	321.49	radiation	1.0	270	< th	dose dependent	rect.	24	18
535	321.57	radiation	1.0	270	< th	dose dependent	rect.	23	21
546	321.76	wind	9.0	10	< th	dose independent	rect.	6	10
552	321.85	radiation	1.0	270	< th	dose dependent	rect.	24	8
555	321.87	radiation	1.0	90	< th	dose independent	sin	3	NA
562	321.93	atmosphere	995.0	270	> th	dose independent	rect.	5	10
570	322.09	atmosphere	995.0	10	> th	dose independent	rect.	6	10
574	322.14	radiation	1.0	270	< th	dose independent	rect.	24	8
587	322.28	atmosphere	995.0	10	> th	dose independent	rect.	16	14
694	323.22	temperature	15.0	270	> th	dose independent	rect.	9	10
725	323.60	wind	9.0	270	< th	dose independent	rect.	15	14
771	324.21	wind	9.0	270	< th	dose dependent	rect.	13	11
780	324.36	atmosphere	1015.0	10	< th	dose independent	rect.	16	14
800	324.57	wind	7.0	270	< th	dose independent	rect.	19	14
807	324.68	humidity	50.0	10	> th	dose independent	rect.	16	14
821	324.90	wind	9.0	10	< th	dose independent	rect.	16	14
823	324.91	wind	1.0	270	> th	dose independent	rect.	9	10
826	324.92	precipitation	0.1	10	< th	dose independent	rect.	16	14
827	324.92	precipitation	0.1	10	< th	dose dependent	rect.	16	14
874	325.51	wind	7.0	270	< th	dose independent	rect.	13	11
875	325.51	temperature	30.0	270	< th	dose independent	rect.	19	14
876	325.53	precipitation	0.1	270	< th	dose independent	rect.	19	14
877	325.53	precipitation	0.1	270	< th	dose dependent	rect.	19	14
907	325.63	wind	9.0	720	< th	dose independent	rect.	4	13
913	325.72	wind	9.0	720	< th	dose independent	rect.	20	21
919	325.78	radiation	1.0	270	< th	dose independent	rect.	23	20
990	326.28	atmosphere	1015.0	270	< th	dose independent	rect.	9	10
991	326.28	temperature	10.0	270	> th	dose independent	rect.	19	14
992	326.28	humidity	50.0	270	> th	dose independent	rect.	19	14
993	326.28	atmosphere	995.0	270	> th	dose independent	rect.	19	14