BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0479900 Os09g0479900|015-064-D07
(68 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04160.1 | chr2:1401450-1407694 REVERSE LENGTH=773 87 1e-18
AT5G59810.1 | chr5:24096895-24100387 REVERSE LENGTH=779 80 3e-16
AT3G14067.1 | chr3:4658421-4660754 REVERSE LENGTH=778 54 2e-08
AT4G34980.1 | chr4:16656929-16659223 REVERSE LENGTH=765 52 6e-08
AT1G04110.1 | chr1:1061457-1063784 REVERSE LENGTH=776 52 8e-08
AT5G11940.1 | chr5:3849283-3852417 FORWARD LENGTH=763 49 6e-07
AT3G14240.1 | chr3:4741637-4743964 REVERSE LENGTH=776 49 7e-07
AT4G10530.1 | chr4:6508600-6511670 FORWARD LENGTH=748 49 8e-07
AT4G21630.1 | chr4:11492248-11495500 REVERSE LENGTH=773 48 1e-06
AT4G26330.1 | chr4:13320408-13323461 FORWARD LENGTH=747 47 2e-06
AT4G10520.1 | chr4:6499794-6502866 FORWARD LENGTH=757 47 2e-06
AT1G32960.1 | chr1:11945351-11948429 FORWARD LENGTH=778 47 2e-06
AT1G20150.1 | chr1:6987332-6990361 REVERSE LENGTH=781 47 3e-06
AT5G45650.1 | chr5:18513520-18518790 REVERSE LENGTH=792 46 4e-06
AT4G10550.3 | chr4:6516613-6520272 REVERSE LENGTH=795 46 4e-06
>AT2G04160.1 | chr2:1401450-1407694 REVERSE LENGTH=773
Length = 772
Score = 87.4 bits (215), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 4 FSIAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
+ I++HP V+SVFPN+ +LHTTRSW+FLG+E + + ++SIW KARFGE II NLDTG
Sbjct: 96 YEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIANLDTG 155
>AT5G59810.1 | chr5:24096895-24100387 REVERSE LENGTH=779
Length = 778
Score = 79.7 bits (195), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
IA+HP V+SVFPN+G +LHTT SW F+ + K+G + +S+W KA +GE II NLDTG
Sbjct: 108 IAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAGYGEDTIIANLDTG 165
>AT3G14067.1 | chr3:4658421-4660754 REVERSE LENGTH=778
Length = 777
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 5 SIAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
++ HPSVISV P++ +HTT + FLG ++ + +W+ + +GE VI+G LDTG
Sbjct: 91 ALRRHPSVISVIPDQAREIHTTHTPAFLGFSQN-----SGLWSNSNYGEDVIVGVLDTG 144
>AT4G34980.1 | chr4:16656929-16659223 REVERSE LENGTH=765
Length = 764
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 9 HPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
HP+V++VF +R LHTTRS +FLG++ +W+++ +G VIIG DTG
Sbjct: 84 HPAVLAVFEDRRRELHTTRSPQFLGLQNQ-----KGLWSESDYGSDVIIGVFDTG 133
>AT1G04110.1 | chr1:1061457-1063784 REVERSE LENGTH=776
Length = 775
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 10 PSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
P V++V P+ ++ TT S++FLG++ G + +W+K+RFG+G IIG LDTG
Sbjct: 98 PEVVAVRPDHVLQVQTTYSYKFLGLDGFGN---SGVWSKSRFGQGTIIGVLDTG 148
>AT5G11940.1 | chr5:3849283-3852417 FORWARD LENGTH=763
Length = 762
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
I+EHP V+ V PN + L TTR++++LG+ + +A+ GE +IIG LD+G
Sbjct: 98 ISEHPDVVQVTPNTFYELQTTRTFDYLGLSHS---TPKGLLHEAKMGEDIIIGVLDSG 152
>AT3G14240.1 | chr3:4741637-4743964 REVERSE LENGTH=776
Length = 775
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
+ +HP VISV P + LHTTRS EFLG+ + + ++ FG ++IG +DTG
Sbjct: 85 LLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKA---GLLEESDFGSDLVIGVIDTG 139
>AT4G10530.1 | chr4:6508600-6511670 FORWARD LENGTH=748
Length = 747
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
I+E P V+ V PN + + TTR+W++LG+ ++S+ KA G VI+G +DTG
Sbjct: 90 ISELPEVVQVIPNTLYEMTTTRTWDYLGVSPGN---SDSLLQKANMGYNVIVGVIDTG 144
>AT4G21630.1 | chr4:11492248-11495500 REVERSE LENGTH=773
Length = 772
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAK-----ARFGEGVIIGNL 60
I+EHP VI V PNR +L TTR+W+ LG+ + ++S AK G IIG +
Sbjct: 113 ISEHPEVIHVIPNRILKLKTTRTWDHLGLSPNPTSFSSSSSAKGLLHETNMGSEAIIGVV 172
Query: 61 DTG 63
DTG
Sbjct: 173 DTG 175
>AT4G26330.1 | chr4:13320408-13323461 FORWARD LENGTH=747
Length = 746
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 5 SIAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
S+A+ VI+VF ++ +LHTTRSW+FLG+ D R + +G +++G DTG
Sbjct: 43 SLAKLNQVITVFKSKSLKLHTTRSWDFLGLAVDNARRTPP--PQLAYGSDIVVGIFDTG 99
>AT4G10520.1 | chr4:6499794-6502866 FORWARD LENGTH=757
Length = 756
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
I+E P V+ V PN + + TTR+W++LG+ ++S+ KA G VI+G +D+G
Sbjct: 90 ISELPEVVQVIPNTLYEMTTTRTWDYLGVSPGN---SDSLLQKANMGYNVIVGVIDSG 144
>AT1G32960.1 | chr1:11945351-11948429 FORWARD LENGTH=778
Length = 777
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
IA+ P V+ V P+ H L TTR+WE+LG+ ++ G+ VIIG +DTG
Sbjct: 93 IADLPEVVHVIPDGFHELATTRTWEYLGLSS---ANPKNLLNDTNMGDQVIIGVIDTG 147
>AT1G20150.1 | chr1:6987332-6990361 REVERSE LENGTH=781
Length = 780
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGME---KDGRIRANSIWAKARFGEG-VIIGNLD 61
IA+ P V+SVFP++ +LHTTRSW+FL E +D + ++ EG IIG LD
Sbjct: 88 IAKQPGVLSVFPDQMLQLHTTRSWDFLVQESYQRDTYFTEMNYEQESEMHEGDTIIGFLD 147
Query: 62 TG 63
+G
Sbjct: 148 SG 149
>AT5G45650.1 | chr5:18513520-18518790 REVERSE LENGTH=792
Length = 791
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 17/69 (24%)
Query: 12 VISVFPN--RGHRLHTTRSWEFLGMEK--------------DGRIR-ANSIWAKARFGEG 54
V+SVF + R + HTTRSWEF+G+E+ D R R + KA+ G+G
Sbjct: 94 VVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADDRFRVGRNFLKKAKHGDG 153
Query: 55 VIIGNLDTG 63
+I+G LD+G
Sbjct: 154 IIVGVLDSG 162
>AT4G10550.3 | chr4:6516613-6520272 REVERSE LENGTH=795
Length = 794
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 6 IAEHPSVISVFPNRGHRLHTTRSWEFLGMEKDGRIRANSIWAKARFGEGVIIGNLDTG 63
IA+ P V+ V P+ ++L TTR+W++LG+ S+ + GE +IIG +DTG
Sbjct: 111 IADLPDVVHVIPDSFYKLATTRTWDYLGLSA---ANPKSLLHETNMGEQIIIGVIDTG 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,661,329
Number of extensions: 54571
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 17
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)