Os09g0464000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Carbonate dehydratase-like protein.
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Os09g0464000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Carbonate dehydratase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.24 | 0.405 | 12.8 | -0.109 | 1.95 | 1.18 | 1.1 | 0.191 | -0.0341 | 10.1 | 83 | 1114 | -- | -- |
| 74.12 | 0.401 | 12.8 | -0.132 | 1.94 | 1.18 | 1.08 | -- | -0.0237 | 10.1 | 81 | 1113 | -- | -- |
| 78.28 | 0.412 | 12.8 | -0.138 | 1.93 | 1.2 | -- | -0.549 | -0.0351 | 10.2 | 81 | 1113 | -- | -- |
| 78.61 | 0.413 | 12.8 | -0.094 | 1.91 | 1.14 | -- | -- | -0.0265 | 10.2 | 81 | 1139 | -- | -- |
| 244.69 | 0.733 | 12.9 | 0.0628 | -- | 1.03 | -- | -0.00374 | -0.0422 | -- | 89 | 1525 | -- | -- |
| 102.13 | 0.474 | 12.8 | 0.053 | 1.68 | -- | 0.932 | -- | -0.0649 | 9.85 | -- | -- | -- | -- |
| 105.47 | 0.481 | 12.8 | 0.0894 | 1.68 | -- | -- | -- | -0.0628 | 9.88 | -- | -- | -- | -- |
| 244.69 | 0.732 | 12.9 | 0.0628 | -- | 1.03 | -- | -- | -0.0422 | -- | 89 | 1525 | -- | -- |
| 78.83 | 0.414 | 12.8 | -- | 1.9 | 1.13 | -- | -- | -0.0201 | 10.2 | 81.31 | 1139 | -- | -- |
| 274.32 | 0.774 | 12.9 | 0.071 | -- | -- | -- | -- | -0.0625 | -- | -- | -- | -- | -- |
| 105.68 | 0.481 | 12.8 | -- | 1.68 | -- | -- | -- | -0.0728 | 9.87 | -- | -- | -- | -- |
| 244.8 | 0.731 | 12.9 | -- | -- | 1.03 | -- | -- | -0.0492 | -- | 89 | 1525 | -- | -- |
| 274.45 | 0.773 | 12.9 | -- | -- | -- | -- | -- | -0.0704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.17 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 3 | 68.95 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 11 | 70.10 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 12 | 70.34 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 14 | 70.39 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 17 | 70.74 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 21 | 70.93 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 22 | 70.94 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 68 | 73.64 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 70 | 73.80 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 77 | 74.11 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 78 | 74.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 106 | 75.13 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 111 | 75.21 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 115 | 75.28 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 122 | 75.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 146 | 75.84 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 199 | 76.16 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 226 | 76.27 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 291 | 76.75 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 352 | 77.42 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 380 | 77.63 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 12 |
| 385 | 77.65 | radiation | 1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 392 | 77.69 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 465 | 78.06 | radiation | 1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 474 | 78.08 | radiation | 1 | 270 | < th | dose independent | rect. | 16 | 11 |
| 661 | 78.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 670 | 78.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 738 | 78.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 744 | 78.76 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 758 | 78.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 20 |