Os09g0460000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os09g0460000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.44 | 0.218 | 10.1 | 0.381 | 0.268 | -0.623 | 0.0668 | 0.938 | 0.155 | 5.18 | 26.8 | 1531 | -- | -- |
| 22.21 | 0.22 | 10.1 | 0.102 | 0.247 | -0.547 | 0.0584 | -- | 0.0993 | 5.13 | 26.7 | 1529 | -- | -- |
| 21.45 | 0.216 | 10.1 | 0.383 | 0.269 | -0.622 | -- | 0.943 | 0.156 | 5.18 | 26.79 | 1526 | -- | -- |
| 22.09 | 0.219 | 10.1 | 0.0968 | 0.291 | -0.533 | -- | -- | 0.0708 | 5.14 | 26.72 | 1504 | -- | -- |
| 23.91 | 0.228 | 10.1 | 0.411 | -- | -0.643 | -- | 0.979 | 0.17 | -- | 26.95 | 1813 | -- | -- |
| 32.98 | 0.269 | 10.2 | -0.103 | 0.283 | -- | -0.0132 | -- | -0.0663 | 5.32 | -- | -- | -- | -- |
| 32.98 | 0.269 | 10.2 | -0.103 | 0.283 | -- | -- | -- | -0.0662 | 5.32 | -- | -- | -- | -- |
| 24.48 | 0.23 | 10.2 | 0.111 | -- | -0.547 | -- | -- | 0.0734 | -- | 26.78 | 1835 | -- | -- |
| 22.33 | 0.22 | 10.1 | -- | 0.278 | -0.524 | -- | -- | 0.0639 | 5.11 | 26.8 | 1512 | -- | -- |
| 37.17 | 0.285 | 10.2 | -0.0937 | -- | -- | -- | -- | -0.0592 | -- | -- | -- | -- | -- |
| 33.27 | 0.27 | 10.2 | -- | 0.282 | -- | -- | -- | -0.0547 | 5.34 | -- | -- | -- | -- |
| 24.78 | 0.232 | 10.2 | -- | -- | -0.538 | -- | -- | 0.0679 | -- | 26.8 | 1835 | -- | -- |
| 37.41 | 0.285 | 10.2 | -- | -- | -- | -- | -- | -0.0488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 9 | 21.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 34 | 21.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 52 | 21.52 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 272 | 21.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 371 | 22.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 379 | 22.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 548 | 22.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 553 | 22.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 570 | 22.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 694 | 22.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 710 | 22.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 748 | 22.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 830 | 22.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 996 | 22.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |