BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0460000 Os09g0460000|AK101876
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10130.1 | chr4:6320959-6321483 REVERSE LENGTH=175 153 4e-38
AT1G56300.1 | chr1:21079022-21080168 REVERSE LENGTH=157 58 3e-09
AT1G74250.1 | chr1:27920328-27922414 FORWARD LENGTH=631 50 7e-07
AT1G68370.1 | chr1:25632046-25634527 REVERSE LENGTH=411 48 3e-06
AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158 47 4e-06
AT5G06910.1 | chr5:2140598-2142525 FORWARD LENGTH=285 47 5e-06
>AT4G10130.1 | chr4:6320959-6321483 REVERSE LENGTH=175
Length = 174
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 113/169 (66%), Gaps = 6/169 (3%)
Query: 1 MLEGGNFSNQETLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEF 60
ML G N ET YE+LSV++DA+Y+EIR +Y+SA+L++HPDK N SSS+ +F
Sbjct: 1 MLVGEN-CVHETYYEILSVKEDASYEEIRNSYRSAILHSHPDKLN---NTSRSSSDDEKF 56
Query: 61 LSVQKAWEILRYPKSRAEYDKQLQSSRQNLEIVATEIEIDDMIVESTADSVELLYPCRCG 120
L +QKAWE+L + R YD L+SSR + I A EI I+DM VE T D ++L Y CRCG
Sbjct: 57 LKIQKAWEVLSDAELRVVYDNDLRSSRHD-GITADEISIEDMSVEITGDVIDLFYQCRCG 115
Query: 121 DYFSITSRELGQIGISVREDGE-MELHTSDSVPSSVVLGCGSCSLKARL 168
DYF + S ELG +G ++ DG+ + + + +SVVL CGSCSLK R+
Sbjct: 116 DYFCVDSSELGTMGFALLRDGDFVYVKRLGAFVASVVLPCGSCSLKTRV 164
>AT1G56300.1 | chr1:21079022-21080168 REVERSE LENGTH=157
Length = 156
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 3 EGGNFSNQETLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEFLS 62
EGG + + + Y +L +RKDA+ +IR AY+ + HPD+ A NP V+ + F
Sbjct: 4 EGGGSNVRSSYYTILGIRKDASVSDIRTAYRKLAMKWHPDR--YARNPGVAGEAKRRFQQ 61
Query: 63 VQKAWEILRYPKSRAEYDKQL 83
+Q+A+ +L R+ YD L
Sbjct: 62 IQEAYSVLNDENKRSMYDVGL 82
>AT1G74250.1 | chr1:27920328-27922414 FORWARD LENGTH=631
Length = 630
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 14 YEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEFLSVQKAWEILRYP 73
YEVL + K+++ DEIR++Y+ L HPDK M L + +F + A+E+L P
Sbjct: 13 YEVLGISKESSPDEIRSSYRRLALQRHPDKL-MKAAGLSEAEATAQFQELVHAYEVLSDP 71
Query: 74 KSRAEYD 80
K RA YD
Sbjct: 72 KERAWYD 78
>AT1G68370.1 | chr1:25632046-25634527 REVERSE LENGTH=411
Length = 410
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 8 SNQETLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEFLSVQKAW 67
+N+ YEVL V KDA EI++AY+ L HPDK A NP S F V ++
Sbjct: 13 ANRRDPYEVLCVSKDANDQEIKSAYRKLALKYHPDKN--ANNPDASEL----FKEVAFSY 66
Query: 68 EILRYPKSRAEYDKQLQSSRQNLEIVATEIEID 100
IL P+ R YD + + L+ ++EID
Sbjct: 67 SILSDPEKRRHYD---NAGFEALDADGMDMEID 96
>AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158
Length = 157
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 12 TLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEFLSVQKAWEILR 71
+LYE+L V + A+ EI+ AY+S HPD S S+ +F+ + KA+ L
Sbjct: 64 SLYELLKVNETASLTEIKTAYRSLAKVYHPD---------ASESDGRDFMEIHKAYATLA 114
Query: 72 YPKSRAEYDKQLQSSRQNLEIVA 94
P +RA YD L+ R+ + A
Sbjct: 115 DPTTRAIYDSTLRVPRRRVHAGA 137
>AT5G06910.1 | chr5:2140598-2142525 FORWARD LENGTH=285
Length = 284
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 8 SNQETLYEVLSVRKDATYDEIRAAYKSAVLNTHPDKAQMALNPLVSSSERNEFLSVQKAW 67
S++ +LYEVL V + AT EIR AY L HPDK Q +++F +QK
Sbjct: 25 SSETSLYEVLGVERRATSQEIRKAYHKLALKLHPDKNQ------DDKEAKDKFQQLQKVI 78
Query: 68 EILRYPKSRAEYDK 81
IL + RA YD+
Sbjct: 79 SILGDEEKRAVYDQ 92
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,483,444
Number of extensions: 122793
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)