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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0459900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-dependent kinase inhibitor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.0754) R2 : 0.589
β1 : -6.39 (0.282) R2dD : 0.502 R2D : 0.249
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.59 (0.253) R2dE : 0.191 R2E : 0.014
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.91 (0.162) R2dN8 : 0.171 R2N8 : 0.0126
σ : 1.41
deviance : 914.1
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.92
memory length : 971
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.78
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
886.12 1.4 7.02 -7.28 0.342 3.82 2.76 -4.83 -2.07 5.55 25.05 972 8.04 --
891.71 1.39 6.92 -6.44 0.424 3.39 2.6 -- -1.87 5.8 25.01 978 8.56 --
904.12 1.4 7.01 -7.19 0.354 3.9 -- -4.36 -2.04 6.54 25.09 970 8.06 --
907.93 1.4 6.92 -6.38 0.395 3.4 -- -- -1.88 5.97 25.07 976 8.25 --
909.23 1.4 7.03 -7.18 -- 4 -- -4.29 -2.09 -- 25 975 7.67 --
1202.8 1.63 6.87 -5.58 1.28 -- 2.78 -- -1.68 3.68 -- -- -- --
1224.71 1.64 6.88 -5.62 1.29 -- -- -- -1.7 3.23 -- -- -- --
914.1 1.41 6.94 -6.39 -- 3.59 -- -- -1.91 -- 24.92 971 7.78 --
1926.51 2.04 6.74 -- 0.58 2.23 -- -- -1.07 4.3 25.3 912 7.05 --
1318.83 1.7 6.88 -5.57 -- -- -- -- -1.66 -- -- -- -- --
2058.06 2.12 6.74 -- 1.18 -- -- -- -1.07 3.22 -- -- -- --
1941.57 2.05 6.76 -- -- 2.51 -- -- -1.12 -- 25.1 920 7.04 --
2136.72 2.16 6.74 -- -- -- -- -- -1.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 902.32 temperature 25 720 > th dose dependent rect. 18 14
3 908.82 temperature 25 720 > th dose dependent rect. 20 3
4 909.80 temperature 25 720 > th dose dependent rect. 21 1
16 919.09 radiation 20 1440 < th dose independent rect. 16 11
19 919.80 radiation 20 1440 < th dose independent rect. 16 2
23 920.52 radiation 20 1440 < th dose independent rect. 16 9
25 920.59 radiation 20 1440 < th dose independent rect. 16 4
52 928.18 temperature 25 720 > th dose dependent sin 12 NA
57 931.81 humidity 80 1440 < th dose dependent rect. 10 11
87 934.44 humidity 50 1440 > th dose dependent rect. 9 12
89 934.56 humidity 80 1440 < th dose dependent sin 22 NA
144 936.23 humidity 80 1440 < th dose dependent rect. 16 23
205 937.59 humidity 80 1440 < th dose dependent rect. 10 23
243 938.58 humidity 80 1440 < th dose dependent no NA NA
245 938.65 humidity 50 1440 > th dose dependent sin 21 NA
249 938.76 humidity 80 1440 < th dose dependent rect. 20 23
252 938.83 humidity 80 1440 < th dose dependent rect. 13 23
259 939.25 humidity 70 1440 > th dose independent rect. 18 20
268 939.60 radiation 20 1440 > th dose independent rect. 16 15
289 940.40 radiation 20 1440 > th dose independent rect. 16 1
340 942.19 humidity 50 1440 > th dose dependent rect. 11 3
382 944.14 humidity 70 1440 < th dose independent rect. 17 21
426 945.83 humidity 60 1440 > th dose independent rect. 11 8
429 945.94 humidity 50 1440 > th dose dependent rect. 10 5
431 946.13 humidity 80 1440 < th dose dependent rect. 11 3
434 946.19 humidity 60 1440 > th dose independent rect. 11 16
436 946.27 humidity 60 1440 > th dose independent rect. 11 14
441 946.35 humidity 60 1440 > th dose independent rect. 11 20
488 947.83 radiation 10 1440 > th dose dependent rect. 16 1
541 948.84 humidity 60 1440 < th dose independent rect. 11 8
542 948.85 temperature 30 1440 < th dose independent sin 15 NA
543 948.96 humidity 80 1440 < th dose dependent rect. 16 1
546 948.99 temperature 30 1440 > th dose independent sin 15 NA
583 949.62 temperature 30 1440 > th dose independent rect. 13 6
605 949.84 temperature 30 1440 < th dose independent rect. 13 14
611 949.96 temperature 30 1440 < th dose independent rect. 13 7
612 949.96 temperature 30 1440 < th dose independent rect. 13 12
615 949.97 temperature 30 1440 < th dose independent rect. 13 10
622 949.99 temperature 30 1440 < th dose independent rect. 13 18
628 950.04 humidity 70 1440 < th dose independent sin 12 NA
638 950.20 radiation 10 1440 > th dose dependent rect. 16 15
639 950.22 temperature 30 1440 < th dose independent rect. 17 22
643 950.29 temperature 30 1440 < th dose independent rect. 11 16
654 950.38 temperature 30 1440 < th dose independent rect. 11 14
655 950.39 temperature 30 1440 < th dose independent rect. 11 9
657 950.39 temperature 30 1440 < th dose independent rect. 11 12
659 950.40 temperature 30 1440 < th dose independent rect. 9 18
662 950.41 temperature 30 1440 < th dose independent rect. 11 20
678 950.47 temperature 30 1440 < th dose independent rect. 9 16
679 950.48 temperature 30 1440 < th dose independent rect. 9 11
681 950.48 temperature 30 1440 < th dose independent rect. 9 14
685 950.49 temperature 30 1440 < th dose independent rect. 9 22
720 950.77 temperature 30 1440 < th dose independent rect. 13 23
750 951.31 humidity 60 1440 > th dose independent sin 18 NA
756 951.36 temperature 30 1440 > th dose independent rect. 11 8
961 952.43 temperature 30 1440 < th dose independent rect. 6 21
986 952.51 temperature 30 1440 < th dose independent rect. 6 15
987 952.51 temperature 30 1440 < th dose independent rect. 6 17