BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0459900 Os09g0459900|AK063208
         (86 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49620.1  | chr1:18365692-18366559 REVERSE LENGTH=196           50   2e-07
AT5G48820.2  | chr5:19792608-19794346 REVERSE LENGTH=241           48   9e-07

>AT1G49620.1 | chr1:18365692-18366559 REVERSE LENGTH=196
          Length = 195

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 59  RRFAAKYNYDIVKDAPMDGRYEWVRVRP 86
           +RF  KYNYDIV D P++GRY+WV ++P
Sbjct: 168 KRFTEKYNYDIVNDTPLEGRYQWVSLKP 195



>AT5G48820.2 | chr5:19792608-19794346 REVERSE LENGTH=241
          Length = 240

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 59  RRFAAKYNYDIVKDAPMDGRYEWVRVRP 86
           R F  KYN+DIV D P+ GRYEWV+V+P
Sbjct: 213 RLFMEKYNFDIVNDIPLSGRYEWVQVKP 240



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,324,263
Number of extensions: 27492
Number of successful extensions: 41
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 86
Length of database: 11,106,569
Length adjustment: 57
Effective length of query: 29
Effective length of database: 9,543,857
Effective search space: 276771853
Effective search space used: 276771853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)