Os09g0456900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os09g0456900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.52 | 0.662 | 6.24 | 3.4 | 1.84 | -1.07 | 0.239 | 0.589 | 0.504 | 4.64 | 18.14 | 1380 | -- | -- |
| 198.96 | 0.657 | 6.24 | 3.45 | 1.83 | -1.05 | 0.269 | -- | 0.522 | 4.65 | 17.07 | 1370 | -- | -- |
| 198.62 | 0.656 | 6.24 | 3.39 | 1.84 | -1.07 | -- | 0.567 | 0.503 | 4.65 | 18.14 | 1376 | -- | -- |
| 199.02 | 0.657 | 6.24 | 3.42 | 1.84 | -1.07 | -- | -- | 0.514 | 4.69 | 17.07 | 1370 | -- | -- |
| 377.71 | 0.905 | 6.25 | 3.49 | -- | -1.12 | -- | 0.325 | 0.568 | -- | 17.22 | 1359 | -- | -- |
| 241.68 | 0.729 | 6.18 | 3.6 | 1.91 | -- | 0.438 | -- | 0.786 | 4.37 | -- | -- | -- | -- |
| 242.2 | 0.729 | 6.18 | 3.6 | 1.91 | -- | -- | -- | 0.783 | 4.39 | -- | -- | -- | -- |
| 377.08 | 0.904 | 6.25 | 3.52 | -- | -1.22 | -- | -- | 0.541 | -- | 17.14 | 1364 | -- | -- |
| 485.39 | 1.03 | 6.27 | -- | 1.95 | -1.18 | -- | -- | 0.324 | 4.44 | 20 | 1436 | -- | -- |
| 438.74 | 0.979 | 6.19 | 3.67 | -- | -- | -- | -- | 0.834 | -- | -- | -- | -- | -- |
| 583.26 | 1.13 | 6.27 | -- | 1.98 | -- | -- | -- | 0.383 | 4.35 | -- | -- | -- | -- |
| 650.06 | 1.19 | 6.43 | -- | -- | -1.84 | -- | -- | -0.0263 | -- | 20.28 | 1361 | -- | -- |
| 794.54 | 1.32 | 6.28 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 3 | 195.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 8 | 196.38 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 9 | 196.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 17 | 197.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 23 | 197.50 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 25 | 197.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 31 | 197.94 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 32 | 198.03 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 43 | 198.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 44 | 198.51 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 59 | 199.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 71 | 199.28 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 87 | 199.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 92 | 199.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 107 | 200.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 112 | 200.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 114 | 200.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 115 | 200.31 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 117 | 200.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 124 | 200.47 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 126 | 200.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 133 | 200.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 136 | 200.64 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 144 | 200.77 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 147 | 200.79 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 170 | 201.01 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 176 | 201.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 184 | 201.15 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 190 | 201.17 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 191 | 201.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 199 | 201.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 202 | 201.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 208 | 201.27 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 211 | 201.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 216 | 201.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 228 | 201.37 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 262 | 201.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 268 | 201.75 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 271 | 201.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 273 | 201.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 276 | 201.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 280 | 201.80 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 284 | 201.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 296 | 201.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 297 | 201.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 302 | 201.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 310 | 201.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 319 | 201.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 320 | 201.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 321 | 201.95 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 331 | 201.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 341 | 202.01 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 350 | 202.06 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 357 | 202.10 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 359 | 202.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 363 | 202.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 366 | 202.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 367 | 202.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 368 | 202.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 373 | 202.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 386 | 202.18 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 392 | 202.19 | radiation | 20 | 1440 | < th | dose dependent | sin | 0 | NA |
| 407 | 202.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 408 | 202.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 419 | 202.24 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 425 | 202.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 463 | 202.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 469 | 202.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 472 | 202.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 473 | 202.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 474 | 202.33 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 488 | 202.34 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 500 | 202.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 534 | 202.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 540 | 202.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 553 | 202.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 574 | 202.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 584 | 202.55 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 606 | 202.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 609 | 202.61 | temperature | 20 | 43200 | < th | dose independent | sin | 23 | NA |
| 615 | 202.62 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 690 | 202.79 | temperature | 20 | 43200 | > th | dose independent | sin | 23 | NA |
| 692 | 202.79 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 700 | 202.81 | radiation | 20 | 1440 | < th | dose independent | sin | 19 | NA |
| 749 | 202.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 750 | 202.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 751 | 202.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 763 | 202.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 774 | 202.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 778 | 202.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 789 | 202.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 791 | 202.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 806 | 202.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 807 | 202.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 816 | 202.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 821 | 202.92 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 837 | 202.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 968 | 203.00 | temperature | 20 | 43200 | < th | dose dependent | sin | 9 | NA |
| 976 | 203.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 995 | 203.02 | wind | 7 | 14400 | < th | dose independent | rect. | 23 | 13 |